Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01862 ATGGCAAACGGAAGCAGAGTTGTCTCTGTTTTAGCCTTTTTCTTCTTTGGGTTCATTGGCTTAGCCACATTTCCTGCAGAAGCAGCACTAAAGAGTTACCAGTTTGATATTCAAGTGAAGAATGTGAGTAGACTATGCCATGCAAAACCTATCGTAACAGTAAATGGGAGGTTTCCAGGGCCAACAATCTATGCAAGAGAAGGAGACAGAGTTATCGTCAATGTCACAAACCATGCACAATATAACATCTCTATTCACTGGCATGGATTAAAGCAATACAGAAATGGGTGGGCAGATGGACCAGCTTACATTACACAATGTCCCATTCAAACAGGGCGTAGCTATGCATACGACTTCAACGTGACAGGACAAAGAGGAACCTTATGGTGGCATGCCCATATTCTTTGGCTGAGGGCTACAGTTTATGGAGCAATTGTAATCATGCCTCAACAAGGAACACCATTTCCTTTCCCTCAGCCAAATAGAGAGTTTGAACTTATATTAGGAGAATGGTGGAATAATGACGTGGAAGAAATCGAGAAGCAAGGAAGCATGATGGGGTTGCCACCAAACATGTCAGATGCACACACAATCAATGGGAAGCCAGGACCATTGTTTCCATGCTCTGAAAAACACACATACGCTGTGGAGGTGGAACAAGGAAAGATATACCTTCTGAGGATCATCAATGCAGCCCTCAATGATGAGCTTTTCTTTGCCATTGCGGGCCATAACATGACAGTTGTGGAGGTCGATGCAGTTTATACAAAACCATTCACAACGCAAGCTATTCTAATTGCACCAGGGCAGACCACAAGCGTCCTACTTCAAGCAAACCAAGCTCCAAACAGATATTTCATGGCTACTAGGCCTTTCCTTGATGTTCCACTTGCAATTGATAATAAAACAGCCACTGCCATTCTTCAATACAAAGGCATTCCGAACACTGTTTTTCCTATCCTTCCTCAATTACCTGCCCCTAACGACACAGATTTCGCCTTAGGCTACAACAAGAAGCTCAAGAGCTTAAACTCACCCCAGTTTCCAGCTAATGTTCCTCTTAAGGTAGATCGAAAGCTCTTTTACGCCATCGGTTTAGGCATGAATGCTTGCCCCACATGCTTGAATGGAACCAGATTGGTTGCTTCTTTGAACAACATCTCCTTTGTGATGCCTAGTGTTGGTCTTCTTCAAGCTCACTATTTCAATATCAAAGGGGTATTCAGAACTGATTTCCCTGACAAACCCATGACGCCTTTCAACTACACTGGTGCACCACTCAGTGCTAATCTTGGCACTACAGTCGGCACAAGGCTGAGCAAGCTTGCATTTAATTCTACTGTTGAACTGGTCCTTCAAGATACCAATCTTCTGACAGTAGAGTCACACCCATTTCATCTCCATGGCTACAACTTCTTCGTCGTTGGGATGGGAATTGGAAATTTTGATCCAGTCAAAGACCCACTAACGTATAACTTGGTCAATCCCATTGAGAGAAATACAGTTGGAGTTCCCACTGGAGGCTGGACAGCCATTCGATTTCAGGCCAATAATCCAGGAGTTTGGTTCATGCATTGTCATCTGGAGCTTCATACAGGTTGGGGTTTGAAGACCGCATTCGTAGTGGAAGATGGACCTGGGAAGGATCATGCCATCCATCCTCCACCCAAGGATCTTCCACAATGCTAG 1689 44.29 MANGSRVVSVLAFFFFGFIGLATFPAEAALKSYQFDIQVKNVSRLCHAKPIVTVNGRFPGPTIYAREGDRVIVNVTNHAQYNISIHWHGLKQYRNGWADGPAYITQCPIQTGRSYAYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPQQGTPFPFPQPNREFELILGEWWNNDVEEIEKQGSMMGLPPNMSDAHTINGKPGPLFPCSEKHTYAVEVEQGKIYLLRIINAALNDELFFAIAGHNMTVVEVDAVYTKPFTTQAILIAPGQTTSVLLQANQAPNRYFMATRPFLDVPLAIDNKTATAILQYKGIPNTVFPILPQLPAPNDTDFALGYNKKLKSLNSPQFPANVPLKVDRKLFYAIGLGMNACPTCLNGTRLVASLNNISFVMPSVGLLQAHYFNIKGVFRTDFPDKPMTPFNYTGAPLSANLGTTVGTRLSKLAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGMGIGNFDPVKDPLTYNLVNPIERNTVGVPTGGWTAIRFQANNPGVWFMHCHLELHTGWGLKTAFVVEDGPGKDHAIHPPPKDLPQC 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53722812 53725189 - Bda008800.1 Bda11g01862 16970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01862 562 Pfam Multicopper oxidase 166 312 IPR001117 -
Bda11g01862 562 CDD CuRO_2_LCC_plant 166 310 IPR034285 -
Bda11g01862 562 Gene3D - 21 149 IPR008972 -
Bda11g01862 562 SUPERFAMILY Cupredoxins 353 562 IPR008972 -
Bda11g01862 562 Pfam Multicopper oxidase 413 544 IPR011706 GO:0005507|GO:0016491
Bda11g01862 562 PANTHER MULTI-COPPER OXIDASE 10 562 IPR045087 -
Bda11g01862 562 TIGRFAM laccase: laccase 29 562 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bda11g01862 562 CDD CuRO_3_LCC_plant 407 545 IPR034289 GO:0005507
Bda11g01862 562 ProSitePatterns Multicopper oxidases signature 2. 525 536 IPR002355 GO:0005507
Bda11g01862 562 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Bda11g01862 562 CDD CuRO_1_LCC_plant 33 149 IPR034288 GO:0005507
Bda11g01862 562 Gene3D - 161 345 IPR008972 -
Bda11g01862 562 Gene3D - 371 562 IPR008972 -
Bda11g01862 562 Pfam Multicopper oxidase 37 151 IPR011707 GO:0005507
Bda11g01862 562 SUPERFAMILY Cupredoxins 157 334 IPR008972 -
Bda11g01862 562 PANTHER LACCASE 10 562 - -
Bda11g01862 562 ProSitePatterns Multicopper oxidases signature 1. 520 540 IPR033138 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01862 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101218482 1007.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01862 Bda-Chr11:53722812 Bda14g00225 Bda-Chr14:1526627 0 dispersed
Bda10g00105 Bda-Chr10:2560801 Bda11g01862 Bda-Chr11:53722812 1.14E-86 transposed
Bda11g00206 Bda-Chr11:2600184 Bda11g01862 Bda-Chr11:53722812 1.75E-10 transposed
Bda11g01884 Bda-Chr11:53874196 Bda11g01862 Bda-Chr11:53722812 4.50E-120 transposed
Bda11g01862 Bda-Chr11:53722812 Bda14g01005 Bda-Chr14:8456809 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g988 Blo04g00914 Blo16g00049 . . Bpe15g00426 Bpe13g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1630 Cone9ag1555 . . . . . . Bda11g01862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01862 Bda_Chr11 FPKM 31.48325 36.74622 38.378708 39.128292 37.046284 36.924541 38.472496 57.185551 53.553638