Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01863 ATGTCCTTCAAAAGCATTGTCCGCGAGATAAAGGAGATGAGAGATGGAATCGGAAGCATCTCAAGGAGAGGTGAAGGGAGGCATTGGCGCGGTCATTTCCGGTCAGACATTGCCCCAGACGTAGCACCTTCCCAATCTCTTGTAATTCAACAAAGCCAGTGGGCTAATCTTCCTCCTGAACTACTTCTAGACATCATCCGAAGGGTAGAACAGAGCGAATCCTCCTGGCCTGCTCGGGCCGTTGTCGTTTTCTGTGCATCGGTTTGTAGATCATGGAGGCTCATTACTAAGGAGATAGTGAAAACTCCCGAGCAATGTGGGAGGCTCACATTTCCCATCTCATTGAAACAGCCTGGCCATCGAGAGTATCCCTTGCAATGTTTTATCAGAAGGGATAGGGCAACTTCTACCTATCTCTTGTACTTCGGTCTGGTGCCCTTGGAGAACGAAAGCGATAAAATGTTGTTAGCAGCTAAGAAGATCAGAAGGGCGACGGGCACGGAGTTTGTCATATCTTTAGTTGCCGATGATTTCTCTCGAGCCAGCAGTACATATGTCGGTAAACTGTCCAATTTTTTGGGTACAAAGTTCACCATTTACGACAGCCAACCTCCATGTGAAGCTCCGATTCAATTTCATAGCAAATCAGCTCGAAGGTTCCATTCCAAGCAAGTCTCTCCTAGAGTTCCAGCTTGTAACTACACCATAAGTACGATCTCCTACGAACTCAATGTTCTCCGCACGAGAGGGCCTCGGAGAATGCAGTGCATCATGCACTCAATTCCTGTCACTTCAATTCAAGAGGGGGGCTCGGCCCCAACTCCGACATCGTTTATGTATTCGATGGAGGAGCAAATATCTGCCCCCTTGGGCTCAAAAGAGAAGGAACCATTTATCGACTTTAGATCGTTGAGCCTCTCGGAATCACTGGCCCGAGTTTCAGGAGGGGCATTGGTTCTGAAGAACAAGGCCCCGAGATGGCATGAGCAGCTGCAGTGCTGGTGCTTGAACTTTAAAGGGCGTGTTACAGTGGCTTCGGTCAAGAATTTTCAACTTGTTGCGGATGTTGATGAATCGCATAACGTCTCGGCCGAAGAGCAAGAAAAGGTGATTTTGCAGTTTGGAAAGATTGGGAAAGATATCTTTACGATGGACTATCGCTACCCACTATCTGCTTTTCAAGCTTTTGCAATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTTGTGA 1230 47.8 MSFKSIVREIKEMRDGIGSISRRGEGRHWRGHFRSDIAPDVAPSQSLVIQQSQWANLPPELLLDIIRRVEQSESSWPARAVVVFCASVCRSWRLITKEIVKTPEQCGRLTFPISLKQPGHREYPLQCFIRRDRATSTYLLYFGLVPLENESDKMLLAAKKIRRATGTEFVISLVADDFSRASSTYVGKLSNFLGTKFTIYDSQPPCEAPIQFHSKSARRFHSKQVSPRVPACNYTISTISYELNVLRTRGPRRMQCIMHSIPVTSIQEGGSAPTPTSFMYSMEEQISAPLGSKEKEPFIDFRSLSLSESLARVSGGALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDESHNVSAEEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPAL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53727722 53729352 + Bda008801.1 Bda11g01863 16971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01863 409 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 388 409 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Bda11g01863 409 Pfam F-box domain 54 101 IPR001810 GO:0005515
Bda11g01863 409 Gene3D Tubby Protein; Chain A 112 409 IPR025659 -
Bda11g01863 409 Pfam Tub family 115 405 IPR000007 -
Bda11g01863 409 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 408 - -
Bda11g01863 409 Gene3D - 49 103 - -
Bda11g01863 409 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bda11g01863 409 PANTHER TUBBY-RELATED 1 408 - -
Bda11g01863 409 SUPERFAMILY Tubby C-terminal domain-like 103 408 IPR025659 -
Bda11g01863 409 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00263 Bda-Chr3:2336476 Bda11g01863 Bda-Chr11:53727722 0 dispersed
Bda08g00279 Bda-Chr8:2908572 Bda11g01863 Bda-Chr11:53727722 4.51E-146 dispersed
Bda11g01863 Bda-Chr11:53727722 Bda15g00463 Bda-Chr15:7706302 4.21E-150 dispersed
Bda01g00525 Bda-Chr1:32229193 Bda11g01863 Bda-Chr11:53727722 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16741 PF01167 Tub 2.70E-103 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01863 K19600 - csv:101205595 629.787