Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01863 | ATGTCCTTCAAAAGCATTGTCCGCGAGATAAAGGAGATGAGAGATGGAATCGGAAGCATCTCAAGGAGAGGTGAAGGGAGGCATTGGCGCGGTCATTTCCGGTCAGACATTGCCCCAGACGTAGCACCTTCCCAATCTCTTGTAATTCAACAAAGCCAGTGGGCTAATCTTCCTCCTGAACTACTTCTAGACATCATCCGAAGGGTAGAACAGAGCGAATCCTCCTGGCCTGCTCGGGCCGTTGTCGTTTTCTGTGCATCGGTTTGTAGATCATGGAGGCTCATTACTAAGGAGATAGTGAAAACTCCCGAGCAATGTGGGAGGCTCACATTTCCCATCTCATTGAAACAGCCTGGCCATCGAGAGTATCCCTTGCAATGTTTTATCAGAAGGGATAGGGCAACTTCTACCTATCTCTTGTACTTCGGTCTGGTGCCCTTGGAGAACGAAAGCGATAAAATGTTGTTAGCAGCTAAGAAGATCAGAAGGGCGACGGGCACGGAGTTTGTCATATCTTTAGTTGCCGATGATTTCTCTCGAGCCAGCAGTACATATGTCGGTAAACTGTCCAATTTTTTGGGTACAAAGTTCACCATTTACGACAGCCAACCTCCATGTGAAGCTCCGATTCAATTTCATAGCAAATCAGCTCGAAGGTTCCATTCCAAGCAAGTCTCTCCTAGAGTTCCAGCTTGTAACTACACCATAAGTACGATCTCCTACGAACTCAATGTTCTCCGCACGAGAGGGCCTCGGAGAATGCAGTGCATCATGCACTCAATTCCTGTCACTTCAATTCAAGAGGGGGGCTCGGCCCCAACTCCGACATCGTTTATGTATTCGATGGAGGAGCAAATATCTGCCCCCTTGGGCTCAAAAGAGAAGGAACCATTTATCGACTTTAGATCGTTGAGCCTCTCGGAATCACTGGCCCGAGTTTCAGGAGGGGCATTGGTTCTGAAGAACAAGGCCCCGAGATGGCATGAGCAGCTGCAGTGCTGGTGCTTGAACTTTAAAGGGCGTGTTACAGTGGCTTCGGTCAAGAATTTTCAACTTGTTGCGGATGTTGATGAATCGCATAACGTCTCGGCCGAAGAGCAAGAAAAGGTGATTTTGCAGTTTGGAAAGATTGGGAAAGATATCTTTACGATGGACTATCGCTACCCACTATCTGCTTTTCAAGCTTTTGCAATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTTGTGA | 1230 | 47.8 | MSFKSIVREIKEMRDGIGSISRRGEGRHWRGHFRSDIAPDVAPSQSLVIQQSQWANLPPELLLDIIRRVEQSESSWPARAVVVFCASVCRSWRLITKEIVKTPEQCGRLTFPISLKQPGHREYPLQCFIRRDRATSTYLLYFGLVPLENESDKMLLAAKKIRRATGTEFVISLVADDFSRASSTYVGKLSNFLGTKFTIYDSQPPCEAPIQFHSKSARRFHSKQVSPRVPACNYTISTISYELNVLRTRGPRRMQCIMHSIPVTSIQEGGSAPTPTSFMYSMEEQISAPLGSKEKEPFIDFRSLSLSESLARVSGGALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDESHNVSAEEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPAL | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 53727722 | 53729352 | + | Bda008801.1 | Bda11g01863 | 16971 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01863 | 409 | PRINTS | Tubby superfamily signature | 320 | 337 | IPR000007 | - | |
Bda11g01863 | 409 | PRINTS | Tubby superfamily signature | 184 | 208 | IPR000007 | - | |
Bda11g01863 | 409 | PRINTS | Tubby superfamily signature | 367 | 386 | IPR000007 | - | |
Bda11g01863 | 409 | PRINTS | Tubby superfamily signature | 338 | 354 | IPR000007 | - | |
Bda11g01863 | 409 | PRINTS | Tubby superfamily signature | 388 | 409 | IPR000007 | - | |
Bda11g01863 | 409 | PRINTS | Tubby superfamily signature | 233 | 260 | IPR000007 | - | |
Bda11g01863 | 409 | Pfam | F-box domain | 54 | 101 | IPR001810 | GO:0005515 | |
Bda11g01863 | 409 | Gene3D | Tubby Protein; Chain A | 112 | 409 | IPR025659 | - | |
Bda11g01863 | 409 | Pfam | Tub family | 115 | 405 | IPR000007 | - | |
Bda11g01863 | 409 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 408 | - | - | |
Bda11g01863 | 409 | Gene3D | - | 49 | 103 | - | - | |
Bda11g01863 | 409 | SUPERFAMILY | F-box domain | 49 | 97 | IPR036047 | GO:0005515 | |
Bda11g01863 | 409 | PANTHER | TUBBY-RELATED | 1 | 408 | - | - | |
Bda11g01863 | 409 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 408 | IPR025659 | - | |
Bda11g01863 | 409 | ProSitePatterns | Tub family signature 1. | 338 | 351 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00263 | Bda-Chr3:2336476 | Bda11g01863 | Bda-Chr11:53727722 | 0 | dispersed | |
Bda08g00279 | Bda-Chr8:2908572 | Bda11g01863 | Bda-Chr11:53727722 | 4.51E-146 | dispersed | |
Bda11g01863 | Bda-Chr11:53727722 | Bda15g00463 | Bda-Chr15:7706302 | 4.21E-150 | dispersed | |
Bda01g00525 | Bda-Chr1:32229193 | Bda11g01863 | Bda-Chr11:53727722 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16741 | PF01167 | Tub | 2.70E-103 | CL0395 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01863 | K19600 | - | csv:101205595 | 629.787 |