Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01863 ATGTCCTTCAAAAGCATTGTCCGCGAGATAAAGGAGATGAGAGATGGAATCGGAAGCATCTCAAGGAGAGGTGAAGGGAGGCATTGGCGCGGTCATTTCCGGTCAGACATTGCCCCAGACGTAGCACCTTCCCAATCTCTTGTAATTCAACAAAGCCAGTGGGCTAATCTTCCTCCTGAACTACTTCTAGACATCATCCGAAGGGTAGAACAGAGCGAATCCTCCTGGCCTGCTCGGGCCGTTGTCGTTTTCTGTGCATCGGTTTGTAGATCATGGAGGCTCATTACTAAGGAGATAGTGAAAACTCCCGAGCAATGTGGGAGGCTCACATTTCCCATCTCATTGAAACAGCCTGGCCATCGAGAGTATCCCTTGCAATGTTTTATCAGAAGGGATAGGGCAACTTCTACCTATCTCTTGTACTTCGGTCTGGTGCCCTTGGAGAACGAAAGCGATAAAATGTTGTTAGCAGCTAAGAAGATCAGAAGGGCGACGGGCACGGAGTTTGTCATATCTTTAGTTGCCGATGATTTCTCTCGAGCCAGCAGTACATATGTCGGTAAACTGTCCAATTTTTTGGGTACAAAGTTCACCATTTACGACAGCCAACCTCCATGTGAAGCTCCGATTCAATTTCATAGCAAATCAGCTCGAAGGTTCCATTCCAAGCAAGTCTCTCCTAGAGTTCCAGCTTGTAACTACACCATAAGTACGATCTCCTACGAACTCAATGTTCTCCGCACGAGAGGGCCTCGGAGAATGCAGTGCATCATGCACTCAATTCCTGTCACTTCAATTCAAGAGGGGGGCTCGGCCCCAACTCCGACATCGTTTATGTATTCGATGGAGGAGCAAATATCTGCCCCCTTGGGCTCAAAAGAGAAGGAACCATTTATCGACTTTAGATCGTTGAGCCTCTCGGAATCACTGGCCCGAGTTTCAGGAGGGGCATTGGTTCTGAAGAACAAGGCCCCGAGATGGCATGAGCAGCTGCAGTGCTGGTGCTTGAACTTTAAAGGGCGTGTTACAGTGGCTTCGGTCAAGAATTTTCAACTTGTTGCGGATGTTGATGAATCGCATAACGTCTCGGCCGAAGAGCAAGAAAAGGTGATTTTGCAGTTTGGAAAGATTGGGAAAGATATCTTTACGATGGACTATCGCTACCCACTATCTGCTTTTCAAGCTTTTGCAATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTTGTGA 1230 47.8 MSFKSIVREIKEMRDGIGSISRRGEGRHWRGHFRSDIAPDVAPSQSLVIQQSQWANLPPELLLDIIRRVEQSESSWPARAVVVFCASVCRSWRLITKEIVKTPEQCGRLTFPISLKQPGHREYPLQCFIRRDRATSTYLLYFGLVPLENESDKMLLAAKKIRRATGTEFVISLVADDFSRASSTYVGKLSNFLGTKFTIYDSQPPCEAPIQFHSKSARRFHSKQVSPRVPACNYTISTISYELNVLRTRGPRRMQCIMHSIPVTSIQEGGSAPTPTSFMYSMEEQISAPLGSKEKEPFIDFRSLSLSESLARVSGGALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDESHNVSAEEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPAL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53727722 53729352 + Bda008801.1 Bda11g01863 16971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01863 409 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 388 409 IPR000007 -
Bda11g01863 409 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Bda11g01863 409 Pfam F-box domain 54 101 IPR001810 GO:0005515
Bda11g01863 409 Gene3D Tubby Protein; Chain A 112 409 IPR025659 -
Bda11g01863 409 Pfam Tub family 115 405 IPR000007 -
Bda11g01863 409 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 408 - -
Bda11g01863 409 Gene3D - 49 103 - -
Bda11g01863 409 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bda11g01863 409 PANTHER TUBBY-RELATED 1 408 - -
Bda11g01863 409 SUPERFAMILY Tubby C-terminal domain-like 103 408 IPR025659 -
Bda11g01863 409 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01863 K19600 TUB, TULP; tubby and related proteins - csv:101205595 629.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00263 Bda-Chr3:2336476 Bda11g01863 Bda-Chr11:53727722 0 dispersed
Bda08g00279 Bda-Chr8:2908572 Bda11g01863 Bda-Chr11:53727722 4.51E-146 dispersed
Bda11g01863 Bda-Chr11:53727722 Bda15g00463 Bda-Chr15:7706302 4.21E-150 dispersed
Bda01g00525 Bda-Chr1:32229193 Bda11g01863 Bda-Chr11:53727722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00735 . 1 426 TUB Transcription Factor Family AT1G76900 70.3 8.0e-173 603.6
Bda08g00739 . 1 426 TUB Transcription Factor Family AT1G76900 70.1 1.5e-171 599.4
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT1G76900 69.2 5.3e-169 590.9
Bda15g00463 . 1 424 TUB Transcription Factor Family AT1G76900 68.0 1.2e-163 573.2
Bda11g00874 CCT 1 425 TUB Transcription Factor Family AT1G76900 61.5 1.2e-144 510.0
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT1G76900 51.4 2.5e-118 422.5
Bda11g01863 . 1 408 TUB Transcription Factor Family AT1G76900 51.1 4.6e-112 401.7
Bda12g00817 . 50 196 TUB Transcription Factor Family AT1G76900 51.0 8.9e-39 158.3
Bda08g00735 . 173 426 TUB Transcription Factor Family AT1G25280 71.5 1.7e-98 355.9
Bda08g00739 . 173 426 TUB Transcription Factor Family AT1G25280 71.2 1.4e-97 352.8
Bda03g00391 CCT 173 429 TUB Transcription Factor Family AT1G25280 66.3 2.4e-92 335.5
Bda15g00463 . 174 424 TUB Transcription Factor Family AT1G25280 68.7 2.9e-90 328.6
Bda11g00874 CCT 191 425 TUB Transcription Factor Family AT1G25280 67.1 9.7e-86 313.5
Bda01g00462 . 176 413 TUB Transcription Factor Family AT1G25280 55.5 4.0e-71 265.0
Bda01g00525 BCT 176 413 TUB Transcription Factor Family AT1G25280 55.5 4.0e-71 265.0
Bda08g00279 . 156 394 TUB Transcription Factor Family AT1G25280 52.6 4.8e-69 258.1
Bda03g00263 BCT 177 413 TUB Transcription Factor Family AT1G25280 54.8 1.8e-68 256.1
Bda03g01209 . 173 417 TUB Transcription Factor Family AT1G25280 50.4 1.3e-66 250.0
Bda11g01863 . 175 408 TUB Transcription Factor Family AT1G25280 53.8 5.0e-66 248.1
Bda03g01209 . 116 417 TUB Transcription Factor Family AT5G18680 60.2 2.8e-94 342.0
Bda08g00279 . 98 394 TUB Transcription Factor Family AT5G18680 60.3 4.1e-93 338.2
Bda08g00735 . 112 426 TUB Transcription Factor Family AT5G18680 51.7 2.3e-80 295.8
Bda15g00463 . 112 424 TUB Transcription Factor Family AT5G18680 51.1 8.8e-80 293.9
Bda08g00739 . 112 426 TUB Transcription Factor Family AT5G18680 50.8 2.0e-79 292.7
Bda01g00462 . 113 413 TUB Transcription Factor Family AT5G18680 50.3 8.3e-78 287.3
Bda01g00525 BCT 113 413 TUB Transcription Factor Family AT5G18680 50.3 8.3e-78 287.3
Bda03g00263 BCT 114 413 TUB Transcription Factor Family AT5G18680 50.3 7.0e-77 284.3
Bda11g01863 . 1 408 TUB Transcription Factor Family AT2G18280 61.6 1.4e-133 473.0
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT2G18280 55.2 1.9e-122 436.0
Bda01g00525 BCT 1 413 TUB Transcription Factor Family AT2G18280 56.7 4.0e-120 428.3
Bda01g00462 . 1 413 TUB Transcription Factor Family AT2G18280 56.7 5.2e-120 427.9
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT2G18280 52.3 3.2e-117 418.7
Bda08g00735 . 1 426 TUB Transcription Factor Family AT2G18280 51.2 5.6e-114 407.9
Bda15g00463 . 1 424 TUB Transcription Factor Family AT2G18280 52.0 7.3e-114 407.5
Bda08g00739 . 1 426 TUB Transcription Factor Family AT2G18280 51.0 9.5e-114 407.1
Bda08g00279 . 1 394 TUB Transcription Factor Family AT2G18280 53.2 2.3e-112 402.5
Bda03g01209 . 116 417 TUB Transcription Factor Family AT2G18280 52.3 8.1e-81 297.7
Bda08g00279 . 1 394 TUB Transcription Factor Family AT2G47900 67.8 5.3e-160 560.8
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT2G47900 55.6 2.1e-132 469.2
Bda15g00463 . 1 424 TUB Transcription Factor Family AT2G47900 56.9 3.0e-131 465.3
Bda08g00735 . 1 426 TUB Transcription Factor Family AT2G47900 55.5 2.6e-130 462.2
Bda08g00739 . 1 426 TUB Transcription Factor Family AT2G47900 55.3 2.6e-130 462.2
Bda03g01209 . 116 417 TUB Transcription Factor Family AT2G47900 69.5 2.6e-122 435.6
Bda01g00525 BCT 1 413 TUB Transcription Factor Family AT2G47900 53.9 3.8e-118 421.8
Bda11g01863 . 1 408 TUB Transcription Factor Family AT2G47900 55.6 5.0e-118 421.4
Bda01g00462 . 1 413 TUB Transcription Factor Family AT2G47900 53.9 5.0e-118 421.4
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT2G47900 53.3 7.3e-117 417.5
Bda11g00874 CCT 1 425 TUB Transcription Factor Family AT2G47900 50.2 1.6e-111 399.8
Bda12g00817 . 48 196 TUB Transcription Factor Family AT2G47900 51.0 1.6e-39 160.6
Bda03g00391 CCT 65 429 TUB Transcription Factor Family AT1G43640 65.8 1.8e-143 505.8
Bda08g00735 . 65 426 TUB Transcription Factor Family AT1G43640 67.4 1.8e-143 505.8
Bda08g00739 . 65 426 TUB Transcription Factor Family AT1G43640 67.1 1.5e-142 502.7
Bda15g00463 . 65 424 TUB Transcription Factor Family AT1G43640 65.4 1.3e-138 489.6
Bda11g00874 CCT 65 425 TUB Transcription Factor Family AT1G43640 60.3 2.1e-123 439.1
Bda08g00279 . 47 394 TUB Transcription Factor Family AT1G43640 51.6 2.0e-102 369.4
Bda03g00263 BCT 67 413 TUB Transcription Factor Family AT1G43640 51.0 4.7e-99 358.2
Bda11g01863 . 66 408 TUB Transcription Factor Family AT1G43640 52.1 1.7e-96 349.7
Bda03g00263 BCT 25 413 TUB Transcription Factor Family AT1G47270 63.5 6.9e-133 470.7
Bda01g00525 BCT 31 413 TUB Transcription Factor Family AT1G47270 61.8 2.0e-132 469.2
Bda01g00462 . 31 413 TUB Transcription Factor Family AT1G47270 61.8 2.6e-132 468.8
Bda11g01863 . 1 407 TUB Transcription Factor Family AT1G47270 57.9 3.8e-123 438.3
Bda08g00735 . 48 426 TUB Transcription Factor Family AT1G47270 55.4 3.9e-112 401.7
Bda08g00739 . 48 426 TUB Transcription Factor Family AT1G47270 55.4 3.9e-112 401.7
Bda15g00463 . 31 424 TUB Transcription Factor Family AT1G47270 52.6 3.3e-111 398.7
Bda03g00391 CCT 31 429 TUB Transcription Factor Family AT1G47270 52.2 1.3e-110 396.7
Bda11g00874 CCT 48 425 TUB Transcription Factor Family AT1G47270 51.6 1.4e-98 356.7
Bda12g00817 . 1 201 TUB Transcription Factor Family AT1G53320 54.2 4.9e-51 198.7
Bda08g00279 . 98 394 TUB Transcription Factor Family AT3G06380 60.8 2.0e-92 335.9
Bda03g01209 . 117 417 TUB Transcription Factor Family AT3G06380 60.5 7.5e-92 334.0
Bda08g00739 . 116 426 TUB Transcription Factor Family AT3G06380 52.1 6.6e-80 294.3
Bda08g00735 . 116 426 TUB Transcription Factor Family AT3G06380 51.8 1.9e-79 292.7
Bda01g00462 . 117 413 TUB Transcription Factor Family AT3G06380 52.2 1.6e-78 289.7
Bda01g00525 BCT 117 413 TUB Transcription Factor Family AT3G06380 52.2 1.6e-78 289.7
Bda15g00463 . 116 424 TUB Transcription Factor Family AT3G06380 50.5 2.3e-77 285.8
Bda03g00263 BCT 118 413 TUB Transcription Factor Family AT3G06380 52.2 9.8e-76 280.4
Bda11g01863 . 117 408 TUB Transcription Factor Family AT3G06380 51.2 1.2e-73 273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16741 PF01167 Tub 2.70E-103 CL0395 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01863 Bda_Chr11 FPKM 1.964981 2.51002 2.206694 1.157835 7.563655 8.054654 8.305191 1.037102 1.828108