Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01864 ATGTGCATGGAACTAATGATATTAGTCGATCGAGTATTGACAATATTTCCAGAAATAGAAGCAGCGAGGCCGAGATGCCCATCAGGAATTCAGGCACTCTGCTCATTGAACTTCGCAGTAGACAAAGCAACAAAGTTACTTCAGTATTGTCGCGAATCCAGTAAACTTTATCTGGCAGCGACAGGAGATACAATTGTCAGAAGATTTCAGAGATCAAGTGAATCTTTGGAGAAAAGTTTATGCGAGATTAAAGACATGGTCCCCGTTTCGTTAGAATCGGAGATCAATCAAATAGCAAATGATCTCAGGAAGTCAACATATCTCTTGGACTCATCGGAAGAAGAAGCTGGGAAGGCTGTGCAGCAGTTGTTGAGAAAAATCGATTCTACTTCGGCTTCTGTGGAGGATGCTTTTCGAACTGCAGCTGTGAAGCTTAACATCACTTCTCAGAAGGAAATCCTTATTGAAAAGAGATCCATCAAGAAACTACTTGGGAATGTGGATGCCAAGGATCAGAGGAGAAAAAATATATTGATGTACCTTTATAATCTTCTGAACAAATACAGAGATTCTGTCATTGTGGAGAATCCCGAGAGGGTCGATGAAATGGTCGTTAACTCAGTTCCAGCTGAGAATTCGTTTAATGGAGCTTTGAATTGTCCATCTATGGAAGATAAACCACATAAAGCATGCAGAGAAAATGTCTCTGAAGCTACAACACTTAGCAGAGCTGCTCCTCCTGCAGAATATAGATGCCCATTATCCTCGGGAATAATGTACGACCCTGTCATCATTGCATCTGGACAAACGTACGAGAGGTGTTCGATACAGAAGTGGTTTGATGAGGGTCATGATTCATGCCCAAAAACTGGAATGAAGTTGTCAAATCAATCGATGACCCCGAACCTTTCCTTGAAGGATTTAATATCGAGATGGTGCTCAAATTGTGGAGTCGCCATTTCAGATCCGAGTATCGAACCAGAAACTAAATTATGGGAATATTCATCCAACTCTATTGCTAGCTTTGGAAGTTCCATGAATGATTTTCGTCTGCATATGGATTTTAGCAATATCTCGTTGGGATCGATGGATGCGAGTTGTTATTCATATTCATTACCTCCTAAACCTGCTATTGGTTTAAGTTTGATGTCATTGCGGACTAAGAATGATTGTTCCACACCCCAGTCTGATGCAAATCTACACGAAACGGATTTTGAGTTCCCGTCGAATCTTAATGAGCTTGAATGGGAGTTACAATGCAAAGTCATCGAAGATTTGAAGAACAGCACGAAGGAGAATGATCGGGTTTGTACTGGGTTGTCAGGAAATGTGGTCGAAGTGCTCACAAGATTTCTGAATGATGCACATGCTCGACAGGACATAAGAGCTGAGAAAGATGGATCTGACTTATTTCTGACATTCTTGAGTGAAAACAGGCAAGGTGTATTGAATATATGCGAAGAAACATTGAGTTTTTTGGCCTGTTTGCTCCGTTCAGAAGTAACGGAAGAAGTTCTTTCTAGCTTTGAAGTGCTGTCTTGCCAGCAACAGTGCATATCCAAGTTTGTGGCTCCTGGAGTTCTTGACTCTATCCTAGAAATCATCGACTCTCCTATCAGAAATTTGAAGGAAAAAGCTGTTAAAATTCTATCCACTCTATCCTCGAGTTATGTCGTTGGCTCCCAAATCGTTTCTCTCGGGTGCATACCAAAATTACTTCCTTTGCTCAACGATGATGATCTTTCGGGCAACTGTATTCTTCTACTGAAAAAATTATGCGACTTTGAGGAGGCTAGAATTTCTGTAGTCGAAACAAAAGGATGTCTCGCTTCTGTTGCACAACTTCTCCAGTCGGGCAGTCTAGAGAAGCAAGAACATGCAGTTATGATTCTCCTTTCTTTATGTTCTCAAAGAGTTGAATATTGTGAATTGGTCATGGCTAATGGAATAATCCCTTCCCTCGTAACCATATCCGTCAATGGAAGTAAGAAAGGTCAGGTGGGGGCATTAGAGTTGCGTCGGCTTTTAAGAGAGGCCTGCGAGGATCGAGCATCTCAGAAACCCGAACACAATTCCTCGAGAAATGGTAGCAACCGCCATGACGTGGACGAAAAGCCCCCGTCCAAGTTATTTAGATTCTTCAGAAAGAAATAA 2154 41.64 MCMELMILVDRVLTIFPEIEAARPRCPSGIQALCSLNFAVDKATKLLQYCRESSKLYLAATGDTIVRRFQRSSESLEKSLCEIKDMVPVSLESEINQIANDLRKSTYLLDSSEEEAGKAVQQLLRKIDSTSASVEDAFRTAAVKLNITSQKEILIEKRSIKKLLGNVDAKDQRRKNILMYLYNLLNKYRDSVIVENPERVDEMVVNSVPAENSFNGALNCPSMEDKPHKACRENVSEATTLSRAAPPAEYRCPLSSGIMYDPVIIASGQTYERCSIQKWFDEGHDSCPKTGMKLSNQSMTPNLSLKDLISRWCSNCGVAISDPSIEPETKLWEYSSNSIASFGSSMNDFRLHMDFSNISLGSMDASCYSYSLPPKPAIGLSLMSLRTKNDCSTPQSDANLHETDFEFPSNLNELEWELQCKVIEDLKNSTKENDRVCTGLSGNVVEVLTRFLNDAHARQDIRAEKDGSDLFLTFLSENRQGVLNICEETLSFLACLLRSEVTEEVLSSFEVLSCQQQCISKFVAPGVLDSILEIIDSPIRNLKEKAVKILSTLSSSYVVGSQIVSLGCIPKLLPLLNDDDLSGNCILLLKKLCDFEEARISVVETKGCLASVAQLLQSGSLEKQEHAVMILLSLCSQRVEYCELVMANGIIPSLVTISVNGSKKGQVGALELRRLLREACEDRASQKPEHNSSRNGSNRHDVDEKPPSKLFRFFRKK 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53729966 53732880 - Bda008802.1 Bda11g01864 16972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01864 717 PANTHER U BOX DOMAIN-CONTAINING 4 695 - -
Bda11g01864 717 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Bda11g01864 717 Gene3D - 415 579 IPR011989 -
Bda11g01864 717 MobiDBLite consensus disorder prediction 681 717 - -
Bda11g01864 717 CDD RING-Ubox_PUB 250 291 IPR045210 -
Bda11g01864 717 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 4 695 - -
Bda11g01864 717 MobiDBLite consensus disorder prediction 681 710 - -
Bda11g01864 717 SUPERFAMILY RING/U-box 242 321 - -
Bda11g01864 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 318 IPR013083 -
Bda11g01864 717 SUPERFAMILY ARM repeat 477 675 IPR016024 -
Bda11g01864 717 Gene3D - 580 687 IPR011989 -
Bda11g01864 717 Pfam U-box domain 247 314 IPR003613 GO:0004842|GO:0016567
Bda11g01864 717 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01864 - - - qsu:111998800 672.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00461 Bda-Chr1:31712987 Bda11g01864 Bda-Chr11:53729966 1.97E-99 dispersed
Bda11g01864 Bda-Chr11:53729966 Bda02g00818 Bda-Chr2:48770320 2.29E-33 dispersed
Bda10g00969 Bda-Chr10:43959739 Bda11g01864 Bda-Chr11:53729966 1.15E-21 transposed
Bda11g01864 Bda-Chr11:53729966 Bda14g01006 Bda-Chr14:8460324 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01864 Bda_Chr11 FPKM 1.55 1.434998 0.0 0.0 3.156342 2.352378 2.860381 0.0 0.0