Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01874 AAGGATTTAGGCAACCTAGCGAATGGAGTCCAACAGGAGGCCGAGATACTGCAGGATGCAAAAAATGGGGATTGCATTCTTATATCAAGAGAAATGGAAGAGGAGGAAGGGAACTTGCTAAAAGCTCGGATGAAGGAAGAAGAGGTTGAGCTGGAAAAGAAGTCAGCTGTTACAGCAAATTTGGATGAAAGTCAATTTACAAAATTGGATGAGCTATTAACTCAAACACAGTTATATACAGAGTTTCTACTGGAGAAAATGGACGACATTACATTTAATGGAGTGGAGAGGGAAACCGAACCTGTTGAGAAGAAAAAAGGCCGTGGCTCTAAAAGAAAAGCTGCTGCAAACTACAATAATAGGAAAGCCAAGAGGGCAGTTGCAGCAATGCTCACTAGATCTCAAGAAAGTGGGAAAGATGAAGATGCAAATCTTACTCTCGAAGAACGAGTTCAAAAGGAGCAGAGAGAACTGGTACCGCTGCTGACTGGTGGACACTTGAAGTCATATCAACTCAAAGGTGTAAAATGGTTGATCTCATTGTGGCAAAATGGATTAAACGGGATTCTTGCTGATCAAATGGGGCTTGGAAAGACAATTCAGACCATCGGTCTCCTTGCACATTTGAAAGGGAAAGGATTGGATGGACCGTACTTAGTGATTGCTCCTCTTTCTACTCTGTCCAATTGGGTTAATGAGATTTCAAGGTTTGTGCCATCAATAAATGCTATTATCTATCACGGCGATAAGAAACAAAGGAACGAGATACGTACAAAGCACATGCCAAGAACAATAGGCCCGAAATTCCCCATAGTAGTAACATCTTATGAGGTTGCTATGAGCGATGCAAGAAAATTTTTGAGACATTATGTCTGGAAATATCTCGTCGTAGATGAGGGACACAGATTGAAAAACTCAAAGTGCAAACTTTTGAGAGAGTTGAAACTTTTATCTGTTGAAAATAAGCTTTTATTAACTGGGACGCCGTTGCAGAATAATCTAGCAGAGCTTTGGTCGTTGTTGAACTTTATCTTGCCAGATATTTTCTCATCCCATGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAATACAGCAATGAAGAGAGAGAAGAATTGGTAGAGAAGCGAAAGAGTCAGGTTGTTGCAAAACTACATGCAATATTGCGTCCATTTCTACTCCGAAGAATAAAATCAGACGTGGAGAACATGCTTCCTGGAAAGAAAGAGATTATAATCTATGCCAACTTAACAGAATATCAGAAGAATTTTCAAGACCATTTAATAAATAAAAGTTTGGAAGAGCATCTCACGGAGAAGGCATCTTCTGGACATAGTGTGAGAAAAAAGCTGAACAATTTGATGATCCAACTTCGGAAGAATTGCAACCATCCTGACCTTTTAGAATCTGATTTTGATAATTCTTCCACATATCCACCTGTGGAGCAAATAGTTGAACAATGTGGTAAATTTCATTTGCTGGACAGATTGTTGTCACGTTTATTTGATCGCAACCATAAAATCCTTATCTTCACCCAATGGAGTAAGATTTTGGACATCATGGATTACTACTTTAGTGAAAAAGGATTCGAAGTTTGTAGAATAGATGGCAGAGTGAAGCTAGATGAAAGGAGGAGACAAGTATGTGCTTGCCTTAAGAATTTTATGGCTTTTTATGCTCTTTTCGGTACCATTCAGGATTTCAATGATGTGAACAGCAATTATAAAATTTTTCTTCTAAGCACCCGAGCTGGTGGACTGGGAATAAATCTTACAGCTGCAGATACTTGTATACTCTACGACAGTGATTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATTGGTCAAACCAAGCCCGTTCATGTTTATAGGCTTGCAACTGCTCAATCAGTAGAGGGACGCATTCTAAAACGAGCATATAGTAAGTTGAAACTTGAGCATGTAGTAATTGGGAAAGGACAGTTTCACCAAGAACGAACCAAATCAAGCTCATATGATATTACTGAGGAAGAAGAGCTGTTGGCACTGCTGAAGGAGGAAGAAAATGCCGAAGACAAGATGATACAAACGGACATTAGCGATGAAGATTTGGAACGGCTAATGGATCGGTCAGATCTGGCAGCTGCTTCGGCTGCGGCTACTGCTCCAAATGTGGAAGAGAAGTGCAATGGTTGGCTTCCTCTGAAAGGGCCAGGTTGGGAAGTAGTGATGCCAACGGCAGCTGGGGGAGTG 2247 40.63 KDLGNLANGVQQEAEILQDAKNGDCILISREMEEEEGNLLKARMKEEEVELEKKSAVTANLDESQFTKLDELLTQTQLYTEFLLEKMDDITFNGVERETEPVEKKKGRGSKRKAAANYNNRKAKRAVAAMLTRSQESGKDEDANLTLEERVQKEQRELVPLLTGGHLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGLLAHLKGKGLDGPYLVIAPLSTLSNWVNEISRFVPSINAIIYHGDKKQRNEIRTKHMPRTIGPKFPIVVTSYEVAMSDARKFLRHYVWKYLVVDEGHRLKNSKCKLLRELKLLSVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWFDLSGKYSNEEREELVEKRKSQVVAKLHAILRPFLLRRIKSDVENMLPGKKEIIIYANLTEYQKNFQDHLINKSLEEHLTEKASSGHSVRKKLNNLMIQLRKNCNHPDLLESDFDNSSTYPPVEQIVEQCGKFHLLDRLLSRLFDRNHKILIFTQWSKILDIMDYYFSEKGFEVCRIDGRVKLDERRRQVCACLKNFMAFYALFGTIQDFNDVNSNYKIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAYSKLKLEHVVIGKGQFHQERTKSSSYDITEEEELLALLKEEENAEDKMIQTDISDEDLERLMDRSDLAAASAAATAPNVEEKCNGWLPLKGPGWEVVMPTAAGGV 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53795238 53804963 - Bda033170 Bda11g01874 16982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01874 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 493 703 IPR001650 -
Bda11g01874 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 396 IPR027417 -
Bda11g01874 749 SMART helicmild6 519 620 IPR001650 -
Bda11g01874 749 Pfam Helicase conserved C-terminal domain 493 620 IPR001650 -
Bda11g01874 749 SMART ultradead3 163 358 IPR014001 -
Bda11g01874 749 Gene3D - 402 723 IPR027417 -
Bda11g01874 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 347 IPR014001 -
Bda11g01874 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 706 IPR027417 -
Bda11g01874 749 Coils Coil 30 52 - -
Bda11g01874 749 Pfam SNF2-related domain 170 467 IPR000330 GO:0005524|GO:0140658
Bda11g01874 749 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 10 749 - -
Bda11g01874 749 CDD SF2_C_SNF 479 630 - -
Bda11g01874 749 PANTHER SNF2/RAD54 HELICASE FAMILY 10 749 - -
Bda11g01874 749 Gene3D - 168 397 IPR038718 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01874 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1110.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01874 Bda-Chr11:53795238 Bda13g00140 Bda-Chr13:1845894 1.36E-132 dispersed
Bda11g01874 Bda-Chr11:53795238 Bda14g01013 Bda-Chr14:8517804 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16745 PF00176 SNF2_N 1.10E-65 CL0023 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01874 Bda_Chr11 FPKM 13.320425 14.135827 10.700892 10.714777 3.678065 3.329957 3.235409 4.371882 4.553143