Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01875 ATGACCTCCTCCATACCCATCCGCCAACTCCGCTGCCTCTCCACCGTCTCCCCTGCTTCTTCTATTTCTATCTCTAAGGCCAAATCAAAACTCCGCGCCGAGTTTGATCCCGATAAAGCTTTGGATATCTACTCCTCCGTCTCCGATCACTATGCTTCCCCTGTCTCCTCTCGTTATGCACAGGAACTCACCGTCCGCCGACTCGCCAAATCTCGCCGTTTCGCAGACATTGAGTCCCTCATTGAATCCCAAAAAAATGACCCCAAAATCACCCAGGAACCCTATCTGTCCACCTTGATTCGATCTTACGGCCGGGCAGGTATGTTCGATCACGCTGCGAAGACCTATGATCAAATGGACGACCTGGGTACTCCTAGATCAGCCATTTCCTTCAATGCTCTGTTATCAGCTGCTAACTTTTCGAAGCAATTTAATAAAGTTGCTGAATTGTTCGATGAAATTCCGCGCAAGTACACTGTTTCTCCGGACAAAATCTCGTATGGTATATTGGTGAAATCTCATTGCGAATGTGGTTCTGTTGATAAGGCATTGAAAATTTTGGATGAGATGGAGAAGAAAGGAGTTGAGATTACTGCGGTAACTTTTACGACCATTTTGGATTCTCTTTACAAGCAGGGGAAGACCGATGAGGCAGTGAAACTGTGGAATGTAATGGTGAACAAGGGATGTGAGATTGATGTAGCGGCCTATAATGTCAAGATTATGAACGAACAAGGTGGGAATCCTGAAAATGTGAAGGGTTTAATTGAGGAAATGAGTAATATTGGTCTGAAACCAGGACACCATCAGTTACAATTATTTGATGACCTAGTTATTGTAAGAGTGGGATGA 852 44.84 MTSSIPIRQLRCLSTVSPASSISISKAKSKLRAEFDPDKALDIYSSVSDHYASPVSSRYAQELTVRRLAKSRRFADIESLIESQKNDPKITQEPYLSTLIRSYGRAGMFDHAAKTYDQMDDLGTPRSAISFNALLSAANFSKQFNKVAELFDEIPRKYTVSPDKISYGILVKSHCECGSVDKALKILDEMEKKGVEITAVTFTTILDSLYKQGKTDEAVKLWNVMVNKGCEIDVAAYNVKIMNEQGGNPENVKGLIEEMSNIGLKPGHHQLQLFDDLVIVRVG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53808083 53808934 - Bda008812.1 Bda11g01875 16983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01875 283 Pfam PPR repeat family 162 211 IPR002885 -
Bda11g01875 283 PANTHER BNAA09G52830D PROTEIN 14 267 - -
Bda11g01875 283 Pfam PPR repeat 97 123 IPR002885 -
Bda11g01875 283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Bda11g01875 283 Gene3D Tetratricopeptide repeat domain 143 246 IPR011990 GO:0005515
Bda11g01875 283 Gene3D Tetratricopeptide repeat domain 12 142 IPR011990 GO:0005515
Bda11g01875 283 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 14 267 - -
Bda11g01875 283 TIGRFAM PPR: pentatricopeptide repeat domain 165 198 IPR002885 -
Bda11g01875 283 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Bda11g01875 283 TIGRFAM PPR: pentatricopeptide repeat domain 97 123 IPR002885 -
Bda11g01875 283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01875 - - - qlo:115995360 397.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00549 Bda-Chr5:53197869 Bda11g01875 Bda-Chr11:53808083 2.20E-40 dispersed
Bda11g01875 Bda-Chr11:53808083 Bda07g01660 Bda-Chr7:30854191 4.58E-21 dispersed
Bda11g01875 Bda-Chr11:53808083 Bda11g01306 Bda-Chr11:14083706 2.14E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28