Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01876 ATGAACTTCGGGAACGAACGCAAACTGGAGTCGGAAAGGAAAGAACGGTTAGCCATGAAACTGGGTCTTGATCCTCGACAAGTGGCTGTTTGGTTTCAGAATCGAAGGGCACGGTGGAAGAACAAGAAAGTGGAGGAAGAATACTCCCTTTTGAAGAATGCACATGAATCTGCTCTCCTTGATAAACGCCGTCTTGAATCGGAGGTAATGAAGCTGAAAGAGCAAGTGGCAGAAGCGGAGAAGGAGATGCAAAGGCTGTTTAATGTTGTGAGCGGGAACAATGGAGGTTCAAGCAACAGTCCAAGCTCGTCGCTCTCAGTGGAAGCCCTGGAAGAAGCCGTAGCGTTAGGGGAGTTCGGGGTGGAAGGCTTTGAAGACGTCTTCTACATGCCTGTACAGAGGAACAGTTACAATCATGTCTACATTTGA 429 48.25 MNFGNERKLESERKERLAMKLGLDPRQVAVWFQNRRARWKNKKVEEEYSLLKNAHESALLDKRRLESEVMKLKEQVAEAEKEMQRLFNVVSGNNGGSSNSPSSSLSVEALEEAVALGEFGVEGFEDVFYMPVQRNSYNHVYI 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53819580 53820085 - Bda008814.1 Bda11g01876 16984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01876 142 SUPERFAMILY Homeodomain-like 3 51 IPR009057 -
Bda11g01876 142 Coils Coil 34 89 - -
Bda11g01876 142 CDD homeodomain 3 43 IPR001356 GO:0003677
Bda11g01876 142 SMART HOX_1 2 46 IPR001356 GO:0003677
Bda11g01876 142 ProSiteProfiles 'Homeobox' domain profile. 1 42 IPR001356 GO:0003677
Bda11g01876 142 Pfam Homeodomain 3 41 IPR001356 GO:0003677
Bda11g01876 142 Gene3D - 1 45 - -
Bda11g01876 142 PRINTS Lambda-repressor HTH signature 13 22 IPR000047 GO:0003677
Bda11g01876 142 PRINTS Lambda-repressor HTH signature 22 38 IPR000047 GO:0003677
Bda11g01876 142 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 134 IPR045224 GO:0003700
Bda11g01876 142 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 2 134 - -
Bda11g01876 142 ProSitePatterns 'Homeobox' domain signature. 17 40 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00064 Bda11g01876 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01876 Bda-Chr11:53819580 Bda05g01196 Bda-Chr5:59978284 2.05E-21 dispersed
Bda11g01876 Bda-Chr11:53819580 Bda04g00064 Bda-Chr4:1067294 1.58E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16746 PF00046 Homeodomain 5.20E-14 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01876 K09338 - csin:114281220 155.606