Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01879 ATGGCTTCTTCTTCTTCTTCTTCTTCTCTTCACGTACCCGAACTCATTTTTCTCTCCCCACGACTTACTGCCTACACTCGCGTCTCTCTCTATAGATCCTGTCTTTTCAAAATTAGCTGGGGTAAGAACCACAGATTTTCTGTTGTTCTTCCGACTCGGATTAATGCTGTTAAAGAAGGGTTTTCGGTGGAACATAGAGAACTACTTGTCAATGGTAATGGAGCTGCTACCACCACTTCTTTTGATTATCGATACAATGGTTCCTTGAATGGAACCGCTTCGGTGATTGGGACTGAAAATGGAGCGACCAATGGGAGCTTTGTGAAGTTCGTTAATGGAAATGGTGCTCCAGCAAAACTGGTGGAGGAAGAGGCGAAGGAAGCCGTGGAGGAAGTTGCATTTTTGGAGTTGACTGAGGACGACAGGAAGAAGAGAATAGAGGAGATTGGTAAAGAAGATGCGTGGTTTAAGCGAAATGGACAGCAGATTGAGGTTTCTGTGGCACCAGGTGGCCGGTGGAGTAGATTTAAAACCTACTCAACAATCCAGAGAACCTTGGAAATATGGGGATTTGTCCTAACTTTTATTATCAGGTCTTGGTTGAACAACAAAAAATTCACTTATCGGGGAGGAATGACAGAGGAGAAGAAAACTGTCCGACGAAAGGCCCTTGCCAAGTGGCTGAAAGAGAGTATCTTAAGGCTTGGTCCAACATTTATTAAAATTGGTCAGCAATTCTCCACAAGGGTGGACATTCTTGCGCAAGAATATGTTGATCAGTTGTCTGAGCTTCAGGATCAAGTTCCTCCTTTTCCTTCAGACACAGCAGTATCTATAGTCGAAGAAGAGCTTGGAGCTCCCGTGGGTGAAGTTTTTCAACAATTTGAATATGAACCTATAGCTGCAGCCAGTCTTGGTCAAGTCCATCGTGCAAAATTGAATGGACGGGAAGTGGTTATCAAAGTACAAAGGCCAGGTCTGAAGGATCTGTTTGATATTGATCTGAAAAATCTCAGGGTAATTGCTGAATATCTTCAAAAGATTGATCCAAAGTCAGATGGTGCAAAAAGAGACTGGGTTGCTATATATGATGAGTGTGCTAATGTCTTGTATCAGGAGATCGACTACACCAAGGAAGCTGCCAATGCTGAGTTATTTGCTAATAACTTCAAAACTATGGACTACGTTAAAGTACCATCAATATATTGGGAATACACCACTCCCCAGGTTTTGACAATGGAGTATGTCCCTGGAATAAAAATAAACAAGATTGGAGCTTTAGATCAACTAGGTGTTGATCGCAAACGGTTGGGTCGATATGCTGTTGAATCTTACTTGGAGCAAATTTTATCTCACGGTTTCTTTCATGCAGACCCTCATCCTGGGAATATTGCTGTTGATGATGTTAATGGTGGTAGGTTGATCTTCTATGATTTTGGTATGATGGGAAGTATTAGTTCAAACATTAGAGAAGGATTACTTGAGTCATTTTATGGCATTTATGAGAAGGATCCAGACAGGGTCCTTCAGTCCATGATTCAAATGGGGGTTCTTGTACCTACAGGAGATATGACAGCTGTCAGGCGAACAGCACAGTTCTTTCTTAACAGTTTTGAAGAACGCCTAGCTGCACAAAGAAAAGAAAGAGAGATGGCAACAGCAGAACTTGGATTTAAAAAGCCATTGACCAAGGAAGAAAAAACAACGAAAAAGAAGGAACGATTGGCAGCAATAGGGGAAGATCTTTTGGCCATTGCTGCCGACCAACCTTTTAGGTTTCCAGCCACTTTCACATTTGTTGTTAGAGCATTTTCAGTTTTGGATGGCATTGGGAAAGGTCTTGATCCACGATTTGACATCACTGAGATTGCCAAACCTTATGCTTTGGAATTGTTAAAATTTCGCGAAGCCGGTGTTGAAGTTATTCTCAAGGATTTTAGAACGAGATGGGACAGACAATATCGTGCTTTCTATAATTTATTTAGGCAGGCAGACAGAGTTGAGAAGCTGGCAGAAATCATCCAAAGATTGGAGCAAGGGGATCTGAAGCTTAGAGTTCGAACTCTGGAATCTGAAAGAGCATTCCAGCGTCTTGCAACTAGTCAGAAGACTCTTGGTAATGTGAGTCTAATTGTTCCTTAA 2142 41.92 MASSSSSSSLHVPELIFLSPRLTAYTRVSLYRSCLFKISWGKNHRFSVVLPTRINAVKEGFSVEHRELLVNGNGAATTTSFDYRYNGSLNGTASVIGTENGATNGSFVKFVNGNGAPAKLVEEEAKEAVEEVAFLELTEDDRKKRIEEIGKEDAWFKRNGQQIEVSVAPGGRWSRFKTYSTIQRTLEIWGFVLTFIIRSWLNNKKFTYRGGMTEEKKTVRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPSDTAVSIVEEELGAPVGEVFQQFEYEPIAAASLGQVHRAKLNGREVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAELFANNFKTMDYVKVPSIYWEYTTPQVLTMEYVPGIKINKIGALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLESFYGIYEKDPDRVLQSMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRKEREMATAELGFKKPLTKEEKTTKKKERLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVILKDFRTRWDRQYRAFYNLFRQADRVEKLAEIIQRLEQGDLKLRVRTLESERAFQRLATSQKTLGNVSLIVP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53829927 53837441 + Bda008817.1 Bda11g01879 16987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01879 713 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 5 708 - -
Bda11g01879 713 SUPERFAMILY Protein kinase-like (PK-like) 265 507 IPR011009 -
Bda11g01879 713 Coils Coil 118 138 - -
Bda11g01879 713 PANTHER ABC TRANSPORTER-LIKE PROTEIN 5 708 - -
Bda11g01879 713 Pfam ABC1 atypical kinase-like domain 263 511 IPR004147 -
Bda11g01879 713 Coils Coil 535 555 - -
Bda11g01879 713 CDD ABC1_ADCK3-like 264 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01879 - - - mdm:103454713 1087.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01879 Bda14g01020 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00953 Bda-Chr1:43072125 Bda11g01879 Bda-Chr11:53829927 3.55E-44 dispersed
Bda04g01245 Bda-Chr4:63046764 Bda11g01879 Bda-Chr11:53829927 8.12E-42 dispersed
Bda11g01879 Bda-Chr11:53829927 Bda14g01020 Bda-Chr14:8597607 0 dispersed
Bda14g00201 Bda-Chr14:1402784 Bda11g01879 Bda-Chr11:53829927 8.41E-40 dispersed
Bda15g00319 Bda-Chr15:6009567 Bda11g01879 Bda-Chr11:53829927 3.07E-29 dispersed
Bda11g01879 Bda-Chr11:53829927 Bda11g01886 Bda-Chr11:53893174 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g881 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0948 Cone1ag1705 . . . . . . . . Bda11g01879 . . . . Bma06g00134 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi7g1137 . . . . . . . . . Cmo07g00508 . . . . Sed14g1089 Cpe19g00791 . Bhi03g01256 Tan03g1945 Cmetu10g0647 . Hepe04g1480 . . . . . . . . . . . . . . . . Cme08g00817 . . Bda11g01879 Bda14g01020 . . . . . . . Cma03g00776 . Car03g00706 Car07g00447 Cpe10g00587 . . . . . . . . . . . . . . . . . Chy02g00677 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01879 Bda_Chr11 FPKM 19.637554 15.011727 6.429245 7.620711 40.270699 45.061565 39.489166 0.815825 1.186116