Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01880 ATGAACTCATCCACACAGTTTATTTCCTCAATGAGGATGGATGTATACGAACCAATGCACCACATTGGCATGTGGGGAGAAAACACAATGATCATCCAACCCGGCTCAAAATTAGATAATCAGTCGGACGATGCTTCATTTGGATCACTCGAACATCCTAACATTTATGTGAACCATGAAACAACTAAACCCGTTGACAAGGTAAAAAGACGTCTTGCACAAAATCGAGAGGCAGCTCGTAAAAGCCGTTTGCGGAAAAAGGCCTACATTCATCAGTTAGAAACAAGTCGTTCGAAGCTGATTCAATTGGAGCTGGAGCTTGATAAAGCAAGACAACAAGGTCTCTATGTTGGTTGCAGAGTTGATTCCAATCAGTTGAGTTTGTCCGGGACAGTAAATTCAGGTGTCACGACATTTGAGACGGAGTATGGACAGTGGGTGGAAGAGCAAAACAGGCAGATATGTGAATTTAGGACAGCCCTTCCTACAGATATAACCGATTTAGAGCTGCGAATAATGGTTGAAAATGGGATGCGGCATTATTTCAATCTATTCCACATGAAAGCAAGAGCAGCAAAGGCTGATGTTTTCTATGTCATGAATGGCATGTGGAAAACTTCAACCGAAAGACTTTTCTTGTGGATTGGAGGTTCTCGTCCTTCCGAGCTTCTCGAGATACTCGTGCCTCAGCTCGATACGTTAACCAAACAACAAGTTGTTGATGTTCACAACCTTCAAAGGTCTTGTAAGCAGGCCGAAGAAGCTCTTCTGCAAGGCATGGAAAAACTCCGTCAGGCTCTTATTGACGTAGTGGCTGGCCAACTAGCTGAAGGGAGTCATCCTCTTCGAACTGAAACTGCAATGGAGAGGCTAGAAGATCTAGTTAGCTTCGTTAATCAAGCTGACCATGTACGGCAAGAATCGTTGCAGCAAATGTACAAAATCCTAACGACGCGTCAGTCTGCTCAGGGGCTGCTTGTTTTGGGAGAGTATTTCCAACGTCTTCGAGCATTAAGTTCACTTTCATCCAACCAACCTCACAACTCCACCTAG 1053 44.16 MNSSTQFISSMRMDVYEPMHHIGMWGENTMIIQPGSKLDNQSDDASFGSLEHPNIYVNHETTKPVDKVKRRLAQNREAARKSRLRKKAYIHQLETSRSKLIQLELELDKARQQGLYVGCRVDSNQLSLSGTVNSGVTTFETEYGQWVEEQNRQICEFRTALPTDITDLELRIMVENGMRHYFNLFHMKARAAKADVFYVMNGMWKTSTERLFLWIGGSRPSELLEILVPQLDTLTKQQVVDVHNLQRSCKQAEEALLQGMEKLRQALIDVVAGQLAEGSHPLRTETAMERLEDLVSFVNQADHVRQESLQQMYKILTTRQSAQGLLVLGEYFQRLRALSSLSSNQPHNST 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53845481 53847297 - Bda008818.1 Bda11g01880 16988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01880 350 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Bda11g01880 350 Coils Coil 93 113 - -
Bda11g01880 350 Pfam bZIP transcription factor 66 100 IPR004827 GO:0003700|GO:0006355
Bda11g01880 350 PANTHER TRANSCRIPTION FACTOR TGA9 1 348 - -
Bda11g01880 350 SUPERFAMILY Leucine zipper domain 68 100 IPR046347 GO:0003700|GO:0006355
Bda11g01880 350 PANTHER TRANSCRIPTION FACTOR TGA1 1 348 - -
Bda11g01880 350 Pfam Seed dormancy control 153 228 IPR025422 GO:0006351|GO:0043565
Bda11g01880 350 Gene3D - 66 115 - -
Bda11g01880 350 SMART brlzneu 63 125 IPR004827 GO:0003700|GO:0006355
Bda11g01880 350 ProSiteProfiles DOG1 domain profile. 136 345 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01880 Bda-Chr11:53845481 Bda14g01022 Bda-Chr14:8625613 0 dispersed
Bda11g01880 Bda-Chr11:53845481 Bda11g01888 Bda-Chr11:53913625 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16747 PF14144 DOG1 1.10E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01880 K14431 - csv:116401613 481.485