Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01888 ATGAACTCATCCACACAGTTTATTTCCTCAATGAGGATGGATGTATACGAACCAATGCACCACATTGGCATGTGGGGAGAAAACACAATGATCATCCAACCCGGCTCAAAATTAGATAATCAGTCGGACGATGCTTCATTTGGATCACTCGAACATCCTAACATTTATGTGAACCATGAAACAACTAAACCCGTTGACAAGGTAAAAAGACGTCTTGCACAAAATCGAGAGGCAGCTCGTAAAAGCCGTTTGCGGAAAAAGGCCTACATTCATCAGTTAGAAACAAGTCGTTCGAAGCTGATTCAATTGGAGCTGGAGCTTGATAAAGCAAGACAACAAGGTCTCTATGTTGGTTGCAGACTTGATTCCAATCAGTTGAGTTTGTCCGGGACAGTAAATTCAGGTGTCACGACATTTGAGACGGAGTATGGACAGTGGGTGGAAGAGCAAAACAGGCAGATATGTGAATTTAGGACAGCCCTTCCTACAGATATAACCGATTTAGAGCTGCGAATAATGGTGGAAAATGGGATGCGGCATTATTTCAATCTATTCCACATGAAAGCAAGAGCAGCAAAGGCTGATGTTTTCTATGTCATGAATGGCATGTGGAAAACTTCAACCGAAAGACTTTTCTTGTGGATTGGAGGTTCTCGTCCTTCCGAGCTTCTCGAGATACTCGTGCCTCAGCTCGATACGTTAACCAAACAGCAAGTTGTTGATGTTCACAACCTTCAAAGGTCTTGTAAGCAGGCCGAAGAAGCTCTTCTGCAAGGCATGGAAAAACTCCGTCAGGCTCTTATTGACGTAGTGGCTGGCCAACTAGCTGAAGGGAGTCATCCTCTTCGAACGGAAACTGCAATGGAGAGGCTAGAAGATCTAGTTAGCTTCGTTAATCAAGCTGACCATGTACGGCAAGAATCGTTGCAGCAAATGTACAAAATCCTAACGACGCGTCAGTCTGCTCAGGGGCTGCTTGTTTTGGGAGAGTATTTCCAACGTCTTCGAGCATTAAGTTCACTTTCATCCAACCGACCTCACAACTCCACCTAG 1053 44.54 MNSSTQFISSMRMDVYEPMHHIGMWGENTMIIQPGSKLDNQSDDASFGSLEHPNIYVNHETTKPVDKVKRRLAQNREAARKSRLRKKAYIHQLETSRSKLIQLELELDKARQQGLYVGCRLDSNQLSLSGTVNSGVTTFETEYGQWVEEQNRQICEFRTALPTDITDLELRIMVENGMRHYFNLFHMKARAAKADVFYVMNGMWKTSTERLFLWIGGSRPSELLEILVPQLDTLTKQQVVDVHNLQRSCKQAEEALLQGMEKLRQALIDVVAGQLAEGSHPLRTETAMERLEDLVSFVNQADHVRQESLQQMYKILTTRQSAQGLLVLGEYFQRLRALSSLSSNRPHNST 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53913625 53915440 - Bda008827.1 Bda11g01888 16996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01888 350 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Bda11g01888 350 Coils Coil 93 113 - -
Bda11g01888 350 Pfam bZIP transcription factor 66 100 IPR004827 GO:0003700|GO:0006355
Bda11g01888 350 SUPERFAMILY Leucine zipper domain 67 102 IPR046347 GO:0003700|GO:0006355
Bda11g01888 350 Pfam Seed dormancy control 153 228 IPR025422 GO:0006351|GO:0043565
Bda11g01888 350 Gene3D - 66 115 - -
Bda11g01888 350 PANTHER TRANSCRIPTION FACTOR TGA1 1 348 - -
Bda11g01888 350 PANTHER TRANSCRIPTION FACTOR TGA9 1 348 - -
Bda11g01888 350 SMART brlzneu 63 125 IPR004827 GO:0003700|GO:0006355
Bda11g01888 350 ProSiteProfiles DOG1 domain profile. 136 345 IPR025422 GO:0006351|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g01888 Bda14g01022 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01888 Bda-Chr11:53913625 Bda07g00678 Bda-Chr7:8066215 2.49E-74 dispersed
Bda11g01880 Bda-Chr11:53845481 Bda11g01888 Bda-Chr11:53913625 0 proximal
Bda11g01888 Bda-Chr11:53913625 Bda14g01022 Bda-Chr14:8625613 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16748 PF14144 DOG1 1.10E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01888 K14431 - csv:116401613 474.167