Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00047 ATGTGTTCTGTCTTGGCGGGAAATGTAGAATCAATGTGGCATTTGGGGCTGACAAGTAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTGTATTATATGCGATCTGGGTTCTGTGGATATGGAAGCAGATGCCGCTTCAATCATCCTCCTGACCGTGCAGCGGTTGCAGCAGCTGTAAGAGCTTCTGGGGATTACCCAGAACGAATAGGGGAACCTGTTTGCCAGTATTACTTAAAAACTGGGACCTGTAAATTTGGGGCATCCTGTAAGTTTCACCATCCAAAACATGGTGGTGGATCCCTTAGCCAGGCTCCTCTTAATATCCATGGATACCCGCTTCGACCGAGCGAAAGAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTCGGTCTAACTTGTAAATTCCACCATCCTCAACCAGCTGGCTCATCCACACCAGCCGCTGCACCTCAGTTTTATCCACCAGTGCAGTCTCCTTCAGTTCCTATGCCCGACCAATATGGAGTGGTATCCACTAGCTTGAGGGTAGCCAGGCCACCTCTTTTACCTGGTTCTTATGTGCATGGGACCTATGGTCCTGTTTTACTTCCCCCAGGAGTTGTTCCAATTCAAGGATGGAGTCCTTATTCAGCACCTGTAAGCCCTGCATTATCTCCTGGTGCTCAACCCACAGTTGGAGCATCTTCTATTTATGGCGTAGGCCAGCTGTCTTCTACAACACCATCTCTTTCAAGACCCTATCCCTCTTTACCTTTGTCGCTTCGTCCTTCCAGCAGTAATCAAAGGGAACAGTTGTTTCCAGAGAGACCTGGTGAACCAGAATGCCAGTATTACGTAAGAACTGGTGATTGCAAGTTTGGGGCAGCTTGCCGATATCATCATCCTCACAATCGAATTGTACCAAGGACAAATTGTGTTCTTAGCCCACTTGGCCTTCCCTTGCGACCGGGGGTGCAAGCTTGTACATTTTACTTGCAAAATGGGCACTGCAAATTCGGATCAACCTGTAAATTTGATCATCCGATAGGGACAATGAGATACAGTCCGTCAGCCTCGTCTCTCATTGACATGCCAGTTGCTCCTTATCCTGTTGGGTCTCTGCTGGCCACTTTGGCTCCTTCATCCTCTTCTTCAGAGCTTAATCCAGAGCTGATGTCAGGGTCAAGGAAAGAATCATATTCGGCTAGATTGCCTTCTTCTGGCAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTGATGTTCAACTTTCTAGCCAAAGTTCTGCTCCTTTGAACAACAGCAGGAATTCTAGACAAGGTGGGGAGCCACGACATTCTAGTTAG 1353 47.52 MCSVLAGNVESMWHLGLTSRESYPERPGVPNCVYYMRSGFCGYGSRCRFNHPPDRAAVAAAVRASGDYPERIGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIHGYPLRPSERECSYYLKTGQCKFGLTCKFHHPQPAGSSTPAAAPQFYPPVQSPSVPMPDQYGVVSTSLRVARPPLLPGSYVHGTYGPVLLPPGVVPIQGWSPYSAPVSPALSPGAQPTVGASSIYGVGQLSSTTPSLSRPYPSLPLSLRPSSSNQREQLFPERPGEPECQYYVRTGDCKFGAACRYHHPHNRIVPRTNCVLSPLGLPLRPGVQACTFYLQNGHCKFGSTCKFDHPIGTMRYSPSASSLIDMPVAPYPVGSLLATLAPSSSSSELNPELMSGSRKESYSARLPSSGSTSSSTVGLIYSQTGSDVQLSSQSSAPLNNSRNSRQGGEPRHSS 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 290653 295309 - Bda009756.1 Bda12g00047 17062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00047 450 ProSiteProfiles Zinc finger C3H1-type profile. 71 99 IPR000571 GO:0046872
Bda12g00047 450 SUPERFAMILY CCCH zinc finger 119 145 IPR036855 GO:0046872
Bda12g00047 450 SMART c3hfinal6 117 144 IPR000571 GO:0046872
Bda12g00047 450 SMART c3hfinal6 26 53 IPR000571 GO:0046872
Bda12g00047 450 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Bda12g00047 450 SMART c3hfinal6 71 98 IPR000571 GO:0046872
Bda12g00047 450 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Bda12g00047 450 SUPERFAMILY CCCH zinc finger 30 54 IPR036855 GO:0046872
Bda12g00047 450 PANTHER PROTEIN PHOSPHATASE RELATED 8 430 - -
Bda12g00047 450 MobiDBLite consensus disorder prediction 378 444 - -
Bda12g00047 450 Gene3D - 23 101 - -
Bda12g00047 450 Gene3D - 272 358 - -
Bda12g00047 450 MobiDBLite consensus disorder prediction 245 270 - -
Bda12g00047 450 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 8 430 - -
Bda12g00047 450 ProSiteProfiles Zinc finger C3H1-type profile. 26 54 IPR000571 GO:0046872
Bda12g00047 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 300 IPR000571 GO:0046872
Bda12g00047 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 28 53 IPR000571 GO:0046872
Bda12g00047 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 346 IPR000571 GO:0046872
Bda12g00047 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 74 98 IPR000571 GO:0046872
Bda12g00047 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 144 IPR000571 GO:0046872
Bda12g00047 450 SUPERFAMILY CCCH zinc finger 322 351 IPR036855 GO:0046872
Bda12g00047 450 ProSiteProfiles Zinc finger C3H1-type profile. 117 145 IPR000571 GO:0046872
Bda12g00047 450 SUPERFAMILY CCCH zinc finger 279 303 IPR036855 GO:0046872
Bda12g00047 450 SUPERFAMILY CCCH zinc finger 74 98 IPR036855 GO:0046872
Bda12g00047 450 MobiDBLite consensus disorder prediction 245 274 - -
Bda12g00047 450 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Bda12g00047 450 MobiDBLite consensus disorder prediction 378 450 - -
Bda12g00047 450 Gene3D - 102 151 - -
Bda12g00047 450 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01144 Bda-Chr7:13579028 Bda12g00047 Bda-Chr12:290653 2.96E-113 dispersed
Bda12g00047 Bda-Chr12:290653 Bda12g00306 Bda-Chr12:3373031 5.09E-115 dispersed
Bda08g00280 Bda-Chr8:2916395 Bda12g00047 Bda-Chr12:290653 3.31E-14 transposed
Bda12g00047 Bda-Chr12:290653 Bda05g00331 Bda-Chr5:46888113 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16751 PF00642 zf-CCCH 1.20E-08 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00047 - - zju:107406882 709.138