Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda12g00047 | ATGTGTTCTGTCTTGGCGGGAAATGTAGAATCAATGTGGCATTTGGGGCTGACAAGTAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTGTATTATATGCGATCTGGGTTCTGTGGATATGGAAGCAGATGCCGCTTCAATCATCCTCCTGACCGTGCAGCGGTTGCAGCAGCTGTAAGAGCTTCTGGGGATTACCCAGAACGAATAGGGGAACCTGTTTGCCAGTATTACTTAAAAACTGGGACCTGTAAATTTGGGGCATCCTGTAAGTTTCACCATCCAAAACATGGTGGTGGATCCCTTAGCCAGGCTCCTCTTAATATCCATGGATACCCGCTTCGACCGAGCGAAAGAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTCGGTCTAACTTGTAAATTCCACCATCCTCAACCAGCTGGCTCATCCACACCAGCCGCTGCACCTCAGTTTTATCCACCAGTGCAGTCTCCTTCAGTTCCTATGCCCGACCAATATGGAGTGGTATCCACTAGCTTGAGGGTAGCCAGGCCACCTCTTTTACCTGGTTCTTATGTGCATGGGACCTATGGTCCTGTTTTACTTCCCCCAGGAGTTGTTCCAATTCAAGGATGGAGTCCTTATTCAGCACCTGTAAGCCCTGCATTATCTCCTGGTGCTCAACCCACAGTTGGAGCATCTTCTATTTATGGCGTAGGCCAGCTGTCTTCTACAACACCATCTCTTTCAAGACCCTATCCCTCTTTACCTTTGTCGCTTCGTCCTTCCAGCAGTAATCAAAGGGAACAGTTGTTTCCAGAGAGACCTGGTGAACCAGAATGCCAGTATTACGTAAGAACTGGTGATTGCAAGTTTGGGGCAGCTTGCCGATATCATCATCCTCACAATCGAATTGTACCAAGGACAAATTGTGTTCTTAGCCCACTTGGCCTTCCCTTGCGACCGGGGGTGCAAGCTTGTACATTTTACTTGCAAAATGGGCACTGCAAATTCGGATCAACCTGTAAATTTGATCATCCGATAGGGACAATGAGATACAGTCCGTCAGCCTCGTCTCTCATTGACATGCCAGTTGCTCCTTATCCTGTTGGGTCTCTGCTGGCCACTTTGGCTCCTTCATCCTCTTCTTCAGAGCTTAATCCAGAGCTGATGTCAGGGTCAAGGAAAGAATCATATTCGGCTAGATTGCCTTCTTCTGGCAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTGATGTTCAACTTTCTAGCCAAAGTTCTGCTCCTTTGAACAACAGCAGGAATTCTAGACAAGGTGGGGAGCCACGACATTCTAGTTAG | 1353 | 47.52 | MCSVLAGNVESMWHLGLTSRESYPERPGVPNCVYYMRSGFCGYGSRCRFNHPPDRAAVAAAVRASGDYPERIGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIHGYPLRPSERECSYYLKTGQCKFGLTCKFHHPQPAGSSTPAAAPQFYPPVQSPSVPMPDQYGVVSTSLRVARPPLLPGSYVHGTYGPVLLPPGVVPIQGWSPYSAPVSPALSPGAQPTVGASSIYGVGQLSSTTPSLSRPYPSLPLSLRPSSSNQREQLFPERPGEPECQYYVRTGDCKFGAACRYHHPHNRIVPRTNCVLSPLGLPLRPGVQACTFYLQNGHCKFGSTCKFDHPIGTMRYSPSASSLIDMPVAPYPVGSLLATLAPSSSSSELNPELMSGSRKESYSARLPSSGSTSSSTVGLIYSQTGSDVQLSSQSSAPLNNSRNSRQGGEPRHSS | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 290653 | 295309 | - | Bda009756.1 | Bda12g00047 | 17062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda12g00047 | 450 | ProSiteProfiles | Zinc finger C3H1-type profile. | 71 | 99 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SUPERFAMILY | CCCH zinc finger | 119 | 145 | IPR036855 | GO:0046872 | |
Bda12g00047 | 450 | SMART | c3hfinal6 | 117 | 144 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SMART | c3hfinal6 | 26 | 53 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SMART | c3hfinal6 | 274 | 301 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SMART | c3hfinal6 | 71 | 98 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SMART | c3hfinal6 | 320 | 347 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SUPERFAMILY | CCCH zinc finger | 30 | 54 | IPR036855 | GO:0046872 | |
Bda12g00047 | 450 | PANTHER | PROTEIN PHOSPHATASE RELATED | 8 | 430 | - | - | |
Bda12g00047 | 450 | MobiDBLite | consensus disorder prediction | 378 | 444 | - | - | |
Bda12g00047 | 450 | Gene3D | - | 23 | 101 | - | - | |
Bda12g00047 | 450 | Gene3D | - | 272 | 358 | - | - | |
Bda12g00047 | 450 | MobiDBLite | consensus disorder prediction | 245 | 270 | - | - | |
Bda12g00047 | 450 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 8 | 430 | - | - | |
Bda12g00047 | 450 | ProSiteProfiles | Zinc finger C3H1-type profile. | 26 | 54 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 276 | 300 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 28 | 53 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 322 | 346 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 74 | 98 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 120 | 144 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SUPERFAMILY | CCCH zinc finger | 322 | 351 | IPR036855 | GO:0046872 | |
Bda12g00047 | 450 | ProSiteProfiles | Zinc finger C3H1-type profile. | 117 | 145 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | SUPERFAMILY | CCCH zinc finger | 279 | 303 | IPR036855 | GO:0046872 | |
Bda12g00047 | 450 | SUPERFAMILY | CCCH zinc finger | 74 | 98 | IPR036855 | GO:0046872 | |
Bda12g00047 | 450 | MobiDBLite | consensus disorder prediction | 245 | 274 | - | - | |
Bda12g00047 | 450 | ProSiteProfiles | Zinc finger C3H1-type profile. | 274 | 302 | IPR000571 | GO:0046872 | |
Bda12g00047 | 450 | MobiDBLite | consensus disorder prediction | 378 | 450 | - | - | |
Bda12g00047 | 450 | Gene3D | - | 102 | 151 | - | - | |
Bda12g00047 | 450 | ProSiteProfiles | Zinc finger C3H1-type profile. | 320 | 348 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g01144 | Bda-Chr7:13579028 | Bda12g00047 | Bda-Chr12:290653 | 2.96E-113 | dispersed | |
Bda12g00047 | Bda-Chr12:290653 | Bda12g00306 | Bda-Chr12:3373031 | 5.09E-115 | dispersed | |
Bda08g00280 | Bda-Chr8:2916395 | Bda12g00047 | Bda-Chr12:290653 | 3.31E-14 | transposed | |
Bda12g00047 | Bda-Chr12:290653 | Bda05g00331 | Bda-Chr5:46888113 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16751 | PF00642 | zf-CCCH | 1.20E-08 | CL0537 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda12g00047 | - | - | zju:107406882 | 709.138 |