Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00080 ATGGTCGCCGACGCTCATGGCCTTAGCCCCAAGGGTCTTCTTTGCCATGCTGGTGCTGGTGCTGCAGCTGGAGTCATTGCTGCTACTTTTGTGTGTCCTTTAGATGTAATAAAGACTCGGTTTCAGGTTCATGGACTGCCAAAGATTGGTAATGGAAGCAGTCTTATAGTTGGCAGCTTGGAACAAATATTCCAGAAGGAGGGGCTACGCGGAATGTACCGTGGGCTCTCGCCCACTGTTCTAGCATTACTTCCTAATTGGGCAGTTTACTTTACAATGTATGAGCAACTCAAAAGTTTACTTGGCTATGATGATGATCATCACCTTTCAGTTGGTGCTAACATGATAGCCGCTTCTGGTGCTGGAGCTGCAACAACTATTGCCACAAATCCTCTCTGGGTTGTAAAGACTAGACTTCAAACGCAAGGAATGAGGCCAGGGGTGGTGCCGTATCAGAATACACTATCTGCTTTGAGGAGGATAGCTCTGGAGGAAGGCATTCGTGGATTATACAGTGGTCTTGTTCCTGCTTTAGCTGGTGTTAGTCATGTTGCAATCCAGTTTCCTACATATGAGAAGATAAAAGAATACTTAGCCAGTAGAAGTAACACTACTACGGATAAACTGAATGCCCAAGATGTTGCTGTTGCCTCATCAGTTTCCAAAATATTTGCGTCGACTTTGACATATCCTCATGAGGTAGTACGGGCAAGGCTCCAAGAGCAAGGGCACCATTCTGAGAAACGATATGCTGGGGTAACAGATTGCATTAAAAAAGTATTTCAGCAAGAAGGCGTCCCTGGATTTTATCGTGGGTGTGCCACCAACCTACTAAGGACAACTCCTGCAGCCGTAATCACATTTACGAGCTTCGAGATGATCCACCGATTTCTCATGACTATATTTCTTCCAGATCCACACTCTCATGCACTATGA 936 45.51 MVADAHGLSPKGLLCHAGAGAAAGVIAATFVCPLDVIKTRFQVHGLPKIGNGSSLIVGSLEQIFQKEGLRGMYRGLSPTVLALLPNWAVYFTMYEQLKSLLGYDDDHHLSVGANMIAASGAGAATTIATNPLWVVKTRLQTQGMRPGVVPYQNTLSALRRIALEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKEYLASRSNTTTDKLNAQDVAVASSVSKIFASTLTYPHEVVRARLQEQGHHSEKRYAGVTDCIKKVFQQEGVPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLMTIFLPDPHSHAL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 591857 597517 + Bda009792.1 Bda12g00080 17095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00080 311 Gene3D Mitochondrial carrier domain 4 104 IPR023395 -
Bda12g00080 311 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 310 - -
Bda12g00080 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 100 IPR018108 -
Bda12g00080 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 310 IPR044712 GO:0006862|GO:0055085
Bda12g00080 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Bda12g00080 311 Gene3D Mitochondrial carrier domain 105 301 IPR023395 -
Bda12g00080 311 SUPERFAMILY Mitochondrial carrier 12 293 IPR023395 -
Bda12g00080 311 Pfam Mitochondrial carrier protein 12 102 IPR018108 -
Bda12g00080 311 Pfam Mitochondrial carrier protein 211 300 IPR018108 -
Bda12g00080 311 Pfam Mitochondrial carrier protein 108 200 IPR018108 -
Bda12g00080 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085
Bda12g00080 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Bda12g00080 311 PRINTS Mitochondrial carrier protein signature 75 95 IPR002067 GO:0055085
Bda12g00080 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Bda12g00080 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Bda12g00080 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00163 Bda-Chr11:2115551 Bda12g00080 Bda-Chr12:591857 8.20E-134 dispersed
Bda12g00080 Bda-Chr12:591857 Bda11g00531 Bda-Chr11:5586906 6.60E-07 dispersed
Bda14g00267 Bda-Chr14:1824967 Bda12g00080 Bda-Chr12:591857 4.77E-27 dispersed
Bda12g00080 Bda-Chr12:591857 Bda01g01046 Bda-Chr1:44575451 2.76E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00080 K15115 - zju:107426265 519.235