Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00106 | ATGGTAGCGGAAGCTGAGATTGTTGTCAGCAAAAACCCTCCGGCTGTATTGGAGGTGCAACGCATAGGAAAAGTAAATGACCATTCTCGTTGGTGTCGTTTGGTCGGAGATTTGGATTCTCCGAGTTTAACCGGAGTTCAAGCTTCCGAGTTGGTTTCTGCCGATGTACCGGCATCGCAGTTGATGGTGAGGAAATCTACAGAACAAGTTCCTGCTCTTGAACCTTCCGATCTACATTATTCTCCCACCATTAGCTCCGGCAGCTATGCTGATATCGGACCTCGCCGATTCATGGAAGACGAACACGTACGGATGGATGACCTTTCGTCGGACGCAATAGGCCTGATCAAATTTCCCAAACCAACTGCTTTCTATGCAGTGTTTGACGGCCATGGCGGAGCTGAAGCGTCAAATTTCGTCAGTAAAAATGTGAAGAGGCTGTTCTTCGAAGTTGTCAATTTTCCAAATTCCATGGAAGTCGACGAAGGTTTGGTAGCAGAGGTGGAGAACTCTCTTCGTTGTTCGTTTCGTTTGGCTGATCAAGCTTTAGCAGAGGAAAGTAGTGTGAGTAATTCTTGTGGCACTACAGCTCTTGCTGCTCTTGTTCTTGGAAGTGTTCTCATCGTGGCAAATGTCGGGGATTGCCGAGCCGTCCTTTGTAGAGGAGGAGAGGCGGTAGACATGTCGAACGATCACAGGCCAACTCATCCCTCCGAAAGGAGACGCGTAGTAGAAATGGGCGGCTTCGTCGATGACGGTTACCTCAACGGTGTTTTATCCATCACGAGAGCATTAGGGGACTGGGACTTGAAGAAGTTCACGCGCAATTCCCCTTCACCTCTAATCTCGGAACCAGAAATCATGCACACGATTCTGACCGAGGAAGATGAGTTTTTGATAATGGGCTGCGACGGAATTTGGGACGTAATGTCCAGTCAACAGGCCGTCACACTGATTCGTCGGGGGCTCCGCCGACATGGGGACTTGGATCAATGTGCTAGGGATCTAGTAAGGGAGGCTTTGAGGCAGAATTCGTTCGACAATCTTACGGTAATTGTCGTGTGCTTCAATGCGATTGATCGGGACGAAATTTACCCGCCTAGGCAGCAGAAATTGAGGTGCTGTAATCTGTCTGCAGAAGCATTTTATAGCATCAAAAGCTGGTTAGACAGTAGTTCAAGCCATTGA | 1188 | 48.57 | MVAEAEIVVSKNPPAVLEVQRIGKVNDHSRWCRLVGDLDSPSLTGVQASELVSADVPASQLMVRKSTEQVPALEPSDLHYSPTISSGSYADIGPRRFMEDEHVRMDDLSSDAIGLIKFPKPTAFYAVFDGHGGAEASNFVSKNVKRLFFEVVNFPNSMEVDEGLVAEVENSLRCSFRLADQALAEESSVSNSCGTTALAALVLGSVLIVANVGDCRAVLCRGGEAVDMSNDHRPTHPSERRRVVEMGGFVDDGYLNGVLSITRALGDWDLKKFTRNSPSPLISEPEIMHTILTEEDEFLIMGCDGIWDVMSSQQAVTLIRRGLRRHGDLDQCARDLVREALRQNSFDNLTVIVVCFNAIDRDEIYPPRQQKLRCCNLSAEAFYSIKSWLDSSSSH | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 854926 | 856400 | + | Bda009818.1 | Bda12g00106 | 17121 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00106 | 395 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 375 | IPR015655 | GO:0004722|GO:0006470 | |
| Bda12g00106 | 395 | SUPERFAMILY | PP2C-like | 78 | 358 | IPR036457 | - | |
| Bda12g00106 | 395 | PANTHER | PROTEIN PHOSPHATASE 2C 49-RELATED | 1 | 375 | - | - | |
| Bda12g00106 | 395 | ProSitePatterns | PPM-type phosphatase domain signature. | 124 | 132 | IPR000222 | GO:0043169 | |
| Bda12g00106 | 395 | ProSiteProfiles | PPM-type phosphatase domain profile. | 85 | 356 | IPR001932 | - | |
| Bda12g00106 | 395 | SMART | PP2C_4 | 75 | 354 | IPR001932 | - | |
| Bda12g00106 | 395 | CDD | PP2Cc | 84 | 356 | IPR001932 | - | |
| Bda12g00106 | 395 | Pfam | Protein phosphatase 2C | 95 | 348 | IPR001932 | - | |
| Bda12g00106 | 395 | Gene3D | - | 72 | 363 | IPR036457 | - | |
| Bda12g00106 | 395 | SMART | PP2C_SIG_2 | 100 | 356 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda06g00816 | Bda-Chr6:11414284 | Bda12g00106 | Bda-Chr12:854926 | 1.17E-30 | dispersed | |
| Bda12g00106 | Bda-Chr12:854926 | Bda13g01275 | Bda-Chr13:35110645 | 7.31E-77 | dispersed | |
| Bda05g00129 | Bda-Chr5:6002537 | Bda12g00106 | Bda-Chr12:854926 | 2.71E-31 | transposed | |
| Bda12g00106 | Bda-Chr12:854926 | Bda13g00231 | Bda-Chr13:2890588 | 8.02E-106 | wgd | |
| Bda12g00106 | Bda-Chr12:854926 | Bda04g00698 | Bda-Chr4:55785709 | 5.52E-151 | wgd | |
| Bda12g00106 | Bda-Chr12:854926 | Bda05g00413 | Bda-Chr5:49739424 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00106 | K14803 | - | pvy:116138071 | 467.233 |