Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00119 ATGAGTTCTGTAGAAATAAGAGCCCTTGGGAAGAGGAATTTAGAATGGGATTTGAATGACTGGAAGTGGGATGGGGATCTTTTCATTGCTAGCACTTTGAATTCAGTGCCATCTGCTACCCTGAGTCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGTTCGTCAAACAGCTCCTCATCATGCTCCGATGATGCTAATATGGGAATTGAAAAAGGGAAGAAAGAAATCGAGAAAAGGAGGAGGATTACTGGGTTGGAAGATAGAGCCTTGCATGATGAAACTGGTGGGCTTATTTTAAAGCTTGGTTCTCATGGGTATCCGCTTCCTGAGAGGGAATTAGGGAATTGGGAGGGATGTAATGGAAAGAAGACGAAATTGGTCGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAGGCCAAAGATTATCACAGACGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGCCAGCTGCTAATGTAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGAATACTTTCCAACATGCATTCGAATCAATCAGACCAAACCACCGATCAGGATCTGATATCACATCTTTTGAGGAGCATTGCCAGTCAAAGTACTGAGCAGAAGGAGAAAGATATATCTGTACATTTGCAGAATCTTCAAAATGGGATGCCAGTTTGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGTGCTCAGGGTCCGTCAATGCCATCAAAACAGCATGCCACTTTGCCATTGTCTGAGATACCATCACAAGGTGTGTTTGCTCAAAATTCCAGAAAGTGGAGATACAAAAAAATTTCTTCAATAAAACGAGATGATTCTGAATGCAATGAGTGTTCTGCAGGGAAAAGCAAGATGAATGACTTTGATTTGAACGACATATACGTTGACTCTGATGATGGAACTGAAGATGTAGAGAGATCTGTACTTCCTGTACATTTAGGGGCGAGTTCCCTAGAGTCTCCTTGGGCGCAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAAGCTCAGAGCCGTACAGATCGTATTGTTATTAAACTATTTGGAAAAGACCCCAGTGATTTTCCTCATGATCTACGAGCACAGGTTCTTGATTGGTTGCAACATAGTCCGACTGACATGGAGAGCTACATTAGACCTGGTTGCGTTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGGATGAACTTTGCTATGACCTAAGTTGTGGCTTGAGTAGGCTTCTACAAGGCTCAGATGATGCTTTCTGGAGCACAGGATGGGTTTATGTTAGAATTCAGCATCATTTAGCATTTGTTTTACATGGTCAAGTTGCGGTAGATACGTCCTTAGCGCTTCGAAATAACAATTATTGTAACATTGTCTGCGTGAAACCTATTGCCGTATCTGCATCAGAGAGGGTTCAGTTTTTAGTTAGAGGCTCGAATTTGAAGAGGCCTGGAACGAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGTTACTCAAGAATCAACTGATTCTGTTGATGCATTAATGGAGCATAATGGGATCCAATGCATTAGCTTTTCTTGCTCTATTCCTATAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCAGCAGCAGCTTTTTTCCATTTATAGTTGCGGAGGATGATGTATGTTCAGACATTCGTGTTCTTGAGACTGAACTGGAGTCGTCGGATATGTCCTCGGATGCCATGGGAGCTCCAGTAATGGAAACAAGGGTTCAAGCGATGGATTTTATTCATGAAATGGGATGGCTTCTTCATAGAGAACAACTGAAGTCTAGATTGAGCAATTTGGATCCAAATCCTGATCTTTACCCTTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATGGACCACGATTGGTGTGCTGTTGTGAGGAAATTATTAAACTTTCTGCTTGATGGAAATGTGAATGTTGGAGATCACCCTTCGTCGAACGCTGCGTTATCTGAGATGAGTATTCTTCACCGGGCTGTAAGGAGAAACAGCAAGTCGCTTGTTGAGCTCCTTTTGAGATATAACCCCAAAAAAGCGAGATGTGAAGAAAATGCAGTGGTTGATGGAGGGGTTGAAGGCTTTTTGTTTAGGCCTGATGTTGCTGGACCTGGAGGCTTGACTCCACTTCACATTGCAGCCGGTAAAGACGGGTCTGAGGATGTCCTGGATGCATTAACAGACGATCCCGACATGGTCGGAATTGAAGCGTGGAAGAGCTCTCGAGATGGTACGGGGTCAACACCCGAAGATTATGCGCGCTTGCGTGGCCATTTCTCGTACATCCATCTTGTCCAGAGGAAAATCAATAAGAGGCTTAAGCCTGGCCATGTAGTTCTCGACATTCCTGCTGTTCTCTCCGAATCTGTGACAAATGTTAAGCAATCTGACAATTTGGGCACTTTCTTCGAGATTGGAACGTCCCAAACAAGAACCAGTCTTAGGAGCTGTAGGTACTGTGATAAGAAACTCACTCATGGAAAATTGAGCAGGACTCTGGTTTACAGGCCGGCAATGTTGTCGATGATAGCCATTGCCGCCGTTTGTGTGTGCGTGGCACTTCTGTTCAAGAGCTCGCCGGAAGTTCTTTATTGTTTCGAGCCGTTCAGGTGGGAATTGTTAGATTATGGAACGAGCTGA 2952 43.94 MSSVEIRALGKRNLEWDLNDWKWDGDLFIASTLNSVPSATLSRQIFPIGTIPETGGSSNSSSSCSDDANMGIEKGKKEIEKRRRITGLEDRALHDETGGLILKLGSHGYPLPERELGNWEGCNGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPAANVSSSNEDQTSGYLLISLLRILSNMHSNQSDQTTDQDLISHLLRSIASQSTEQKEKDISVHLQNLQNGMPVCNSELASTFLSNGAQGPSMPSKQHATLPLSEIPSQGVFAQNSRKWRYKKISSIKRDDSECNECSAGKSKMNDFDLNDIYVDSDDGTEDVERSVLPVHLGASSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKDPSDFPHDLRAQVLDWLQHSPTDMESYIRPGCVVLTIYLRQTEDAWDELCYDLSCGLSRLLQGSDDAFWSTGWVYVRIQHHLAFVLHGQVAVDTSLALRNNNYCNIVCVKPIAVSASERVQFLVRGSNLKRPGTRLLCALEGKYLTEKVTQESTDSVDALMEHNGIQCISFSCSIPIVNGRGFIEVEDHGFSSSFFPFIVAEDDVCSDIRVLETELESSDMSSDAMGAPVMETRVQAMDFIHEMGWLLHREQLKSRLSNLDPNPDLYPLNRFKWLMDFSMDHDWCAVVRKLLNFLLDGNVNVGDHPSSNAALSEMSILHRAVRRNSKSLVELLLRYNPKKARCEENAVVDGGVEGFLFRPDVAGPGGLTPLHIAAGKDGSEDVLDALTDDPDMVGIEAWKSSRDGTGSTPEDYARLRGHFSYIHLVQRKINKRLKPGHVVLDIPAVLSESVTNVKQSDNLGTFFEIGTSQTRTSLRSCRYCDKKLTHGKLSRTLVYRPAMLSMIAIAAVCVCVALLFKSSPEVLYCFEPFRWELLDYGTS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1052667 1057455 - Bda009836.1 Bda12g00119 17134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00119 983 Gene3D - 689 874 IPR036770 -
Bda12g00119 983 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 982 IPR044817 GO:0003677
Bda12g00119 983 MobiDBLite consensus disorder prediction 50 72 - -
Bda12g00119 983 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bda12g00119 983 MobiDBLite consensus disorder prediction 50 68 - -
Bda12g00119 983 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bda12g00119 983 MobiDBLite consensus disorder prediction 393 431 - -
Bda12g00119 983 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 7 982 - -
Bda12g00119 983 MobiDBLite consensus disorder prediction 203 226 - -
Bda12g00119 983 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
Bda12g00119 983 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bda12g00119 983 SMART ANK_2a 756 785 IPR002110 GO:0005515
Bda12g00119 983 SMART ANK_2a 809 839 IPR002110 GO:0005515
Bda12g00119 983 SUPERFAMILY Ankyrin repeat 726 868 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00119 - - - qsu:112005479 1290.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01051 Bda-Chr3:10264776 Bda12g00119 Bda-Chr12:1052667 1.35E-32 dispersed
Bda10g00945 Bda-Chr10:43766901 Bda12g00119 Bda-Chr12:1052667 7.77E-28 dispersed
Bda12g00119 Bda-Chr12:1052667 Bda15g00679 Bda-Chr15:10230752 3.30E-33 dispersed
Bda11g00488 Bda-Chr11:5154402 Bda12g00119 Bda-Chr12:1052667 0 transposed
Bda12g00119 Bda-Chr12:1052667 Bda05g00421 Bda-Chr5:49870774 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50670 65.9 4.1e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16754 PF03110 SBP 2.70E-29 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00119 Bda_Chr12 FPKM 3.24263 5.349807 0.0 0.0 0.0 0.0 0.0 0.0 0.0