Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00119 ATGAGTTCTGTAGAAATAAGAGCCCTTGGGAAGAGGAATTTAGAATGGGATTTGAATGACTGGAAGTGGGATGGGGATCTTTTCATTGCTAGCACTTTGAATTCAGTGCCATCTGCTACCCTGAGTCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGTTCGTCAAACAGCTCCTCATCATGCTCCGATGATGCTAATATGGGAATTGAAAAAGGGAAGAAAGAAATCGAGAAAAGGAGGAGGATTACTGGGTTGGAAGATAGAGCCTTGCATGATGAAACTGGTGGGCTTATTTTAAAGCTTGGTTCTCATGGGTATCCGCTTCCTGAGAGGGAATTAGGGAATTGGGAGGGATGTAATGGAAAGAAGACGAAATTGGTCGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAGGCCAAAGATTATCACAGACGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGCCAGCTGCTAATGTAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGAATACTTTCCAACATGCATTCGAATCAATCAGACCAAACCACCGATCAGGATCTGATATCACATCTTTTGAGGAGCATTGCCAGTCAAAGTACTGAGCAGAAGGAGAAAGATATATCTGTACATTTGCAGAATCTTCAAAATGGGATGCCAGTTTGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGTGCTCAGGGTCCGTCAATGCCATCAAAACAGCATGCCACTTTGCCATTGTCTGAGATACCATCACAAGGTGTGTTTGCTCAAAATTCCAGAAAGTGGAGATACAAAAAAATTTCTTCAATAAAACGAGATGATTCTGAATGCAATGAGTGTTCTGCAGGGAAAAGCAAGATGAATGACTTTGATTTGAACGACATATACGTTGACTCTGATGATGGAACTGAAGATGTAGAGAGATCTGTACTTCCTGTACATTTAGGGGCGAGTTCCCTAGAGTCTCCTTGGGCGCAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAAGCTCAGAGCCGTACAGATCGTATTGTTATTAAACTATTTGGAAAAGACCCCAGTGATTTTCCTCATGATCTACGAGCACAGGTTCTTGATTGGTTGCAACATAGTCCGACTGACATGGAGAGCTACATTAGACCTGGTTGCGTTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGGATGAACTTTGCTATGACCTAAGTTGTGGCTTGAGTAGGCTTCTACAAGGCTCAGATGATGCTTTCTGGAGCACAGGATGGGTTTATGTTAGAATTCAGCATCATTTAGCATTTGTTTTACATGGTCAAGTTGCGGTAGATACGTCCTTAGCGCTTCGAAATAACAATTATTGTAACATTGTCTGCGTGAAACCTATTGCCGTATCTGCATCAGAGAGGGTTCAGTTTTTAGTTAGAGGCTCGAATTTGAAGAGGCCTGGAACGAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGTTACTCAAGAATCAACTGATTCTGTTGATGCATTAATGGAGCATAATGGGATCCAATGCATTAGCTTTTCTTGCTCTATTCCTATAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCAGCAGCAGCTTTTTTCCATTTATAGTTGCGGAGGATGATGTATGTTCAGACATTCGTGTTCTTGAGACTGAACTGGAGTCGTCGGATATGTCCTCGGATGCCATGGGAGCTCCAGTAATGGAAACAAGGGTTCAAGCGATGGATTTTATTCATGAAATGGGATGGCTTCTTCATAGAGAACAACTGAAGTCTAGATTGAGCAATTTGGATCCAAATCCTGATCTTTACCCTTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATGGACCACGATTGGTGTGCTGTTGTGAGGAAATTATTAAACTTTCTGCTTGATGGAAATGTGAATGTTGGAGATCACCCTTCGTCGAACGCTGCGTTATCTGAGATGAGTATTCTTCACCGGGCTGTAAGGAGAAACAGCAAGTCGCTTGTTGAGCTCCTTTTGAGATATAACCCCAAAAAAGCGAGATGTGAAGAAAATGCAGTGGTTGATGGAGGGGTTGAAGGCTTTTTGTTTAGGCCTGATGTTGCTGGACCTGGAGGCTTGACTCCACTTCACATTGCAGCCGGTAAAGACGGGTCTGAGGATGTCCTGGATGCATTAACAGACGATCCCGACATGGTCGGAATTGAAGCGTGGAAGAGCTCTCGAGATGGTACGGGGTCAACACCCGAAGATTATGCGCGCTTGCGTGGCCATTTCTCGTACATCCATCTTGTCCAGAGGAAAATCAATAAGAGGCTTAAGCCTGGCCATGTAGTTCTCGACATTCCTGCTGTTCTCTCCGAATCTGTGACAAATGTTAAGCAATCTGACAATTTGGGCACTTTCTTCGAGATTGGAACGTCCCAAACAAGAACCAGTCTTAGGAGCTGTAGGTACTGTGATAAGAAACTCACTCATGGAAAATTGAGCAGGACTCTGGTTTACAGGCCGGCAATGTTGTCGATGATAGCCATTGCCGCCGTTTGTGTGTGCGTGGCACTTCTGTTCAAGAGCTCGCCGGAAGTTCTTTATTGTTTCGAGCCGTTCAGGTGGGAATTGTTAGATTATGGAACGAGCTGA 2952 43.94 MSSVEIRALGKRNLEWDLNDWKWDGDLFIASTLNSVPSATLSRQIFPIGTIPETGGSSNSSSSCSDDANMGIEKGKKEIEKRRRITGLEDRALHDETGGLILKLGSHGYPLPERELGNWEGCNGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPAANVSSSNEDQTSGYLLISLLRILSNMHSNQSDQTTDQDLISHLLRSIASQSTEQKEKDISVHLQNLQNGMPVCNSELASTFLSNGAQGPSMPSKQHATLPLSEIPSQGVFAQNSRKWRYKKISSIKRDDSECNECSAGKSKMNDFDLNDIYVDSDDGTEDVERSVLPVHLGASSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKDPSDFPHDLRAQVLDWLQHSPTDMESYIRPGCVVLTIYLRQTEDAWDELCYDLSCGLSRLLQGSDDAFWSTGWVYVRIQHHLAFVLHGQVAVDTSLALRNNNYCNIVCVKPIAVSASERVQFLVRGSNLKRPGTRLLCALEGKYLTEKVTQESTDSVDALMEHNGIQCISFSCSIPIVNGRGFIEVEDHGFSSSFFPFIVAEDDVCSDIRVLETELESSDMSSDAMGAPVMETRVQAMDFIHEMGWLLHREQLKSRLSNLDPNPDLYPLNRFKWLMDFSMDHDWCAVVRKLLNFLLDGNVNVGDHPSSNAALSEMSILHRAVRRNSKSLVELLLRYNPKKARCEENAVVDGGVEGFLFRPDVAGPGGLTPLHIAAGKDGSEDVLDALTDDPDMVGIEAWKSSRDGTGSTPEDYARLRGHFSYIHLVQRKINKRLKPGHVVLDIPAVLSESVTNVKQSDNLGTFFEIGTSQTRTSLRSCRYCDKKLTHGKLSRTLVYRPAMLSMIAIAAVCVCVALLFKSSPEVLYCFEPFRWELLDYGTS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1052667 1057455 - Bda009836.1 Bda12g00119 17134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00119 983 Gene3D - 689 874 IPR036770 -
Bda12g00119 983 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 982 IPR044817 GO:0003677
Bda12g00119 983 MobiDBLite consensus disorder prediction 50 72 - -
Bda12g00119 983 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bda12g00119 983 MobiDBLite consensus disorder prediction 50 68 - -
Bda12g00119 983 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bda12g00119 983 MobiDBLite consensus disorder prediction 393 431 - -
Bda12g00119 983 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 7 982 - -
Bda12g00119 983 MobiDBLite consensus disorder prediction 203 226 - -
Bda12g00119 983 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
Bda12g00119 983 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bda12g00119 983 SMART ANK_2a 756 785 IPR002110 GO:0005515
Bda12g00119 983 SMART ANK_2a 809 839 IPR002110 GO:0005515
Bda12g00119 983 SUPERFAMILY Ankyrin repeat 726 868 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01051 Bda-Chr3:10264776 Bda12g00119 Bda-Chr12:1052667 1.35E-32 dispersed
Bda10g00945 Bda-Chr10:43766901 Bda12g00119 Bda-Chr12:1052667 7.77E-28 dispersed
Bda12g00119 Bda-Chr12:1052667 Bda15g00679 Bda-Chr15:10230752 3.30E-33 dispersed
Bda11g00488 Bda-Chr11:5154402 Bda12g00119 Bda-Chr12:1052667 0 transposed
Bda12g00119 Bda-Chr12:1052667 Bda05g00421 Bda-Chr5:49870774 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16754 PF03110 SBP 2.70E-29 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00119 - - qsu:112005479 1290.79