Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00153 ATGAGTTGCCAGACGACTGAATGCGAATCGTCTTTTTACAACTTATTGGAATTTGCTTCTGATAATGATGTTGAAGGTTTTAAACGTCTGATAGATTATGATGCTTCTTTCATTAATAAGTCTGGACTGTGGTACGTCCGTCGAAATGGCTCAAAACAGGTTGTACAGGAGGATAGAACTCCACTAATGGTTGCTGCTACCTATGGTAGTGTAAATGTCTTGAAGCTTTTATTGTCATATCCTGAGATTGATGTAAATCTCTCATCTGGCCTGGATAGAAGCACGGCTCTTCATTGTGCTGCTTCTAGTGGATCTGTCAACATTGTTGAAGTTGTTCATATTCTTTTATCTGCGAGTGCAGATCCTAATTCTGTTGATGCTAAGGGTGATCGCCCTGTTGATGTCATTTATGTACATCCAAAGCTGCATAACATGAAGACCAAGCTTGAGGAACTATTAAGAAGCAATCATTGTCAACCCGATGAGGTGACCTTACAATTATCCATCAAGACCTCATGTTCTGTGTCATCATCTCTTTCTTCATCACCAGAAAATGGGTTTTTATCTTCAGAGTTAAATTCTCTTGTTGTGAAAAGTGCTGACGAATCTGTTAATTCTACAACGGAAAAGAAAGAATATCCAATCGATCCTTCTCTTCCCGACATTAAAAATAGCATTTATGCAACTGATGAGTTCCGCATGTTTTCTTTTAAGGTGAGGCCTTGTTCGCGAGCATATTCACATGATTGGACTGAATGTCCATTTGTCCATCCTGGGGAAAATGCTCGTAGGAGGGATCCAAGAAAGTTTCATTACAGTTGTGTACCATGTCCAGATTTCCGCAAGGGTGCTTGTAGGCGGGGGGATATGTGTGAATATGCACATGGGGTGTTTGAGTGCTGGCTCCATCCTGCTCAGTATCGAACACGACTATGCAAGGATGGCACTAGTTGTGATAGACGGGTTTGTTTTTTTGCTCATGCAACTGAGGAACTCAGGCCCTTGTATGTATCTACTGGTTCTGCCGTTCCTTCCCCACGATCGTCAACATCAGCACCAAATGTTATGGACATGGCTGCCGCATTAAGTCTCTTTCCTGGCTCTCCGTCATCATTGTCAGCCATGTCTCCTTCTCCATTCTCTCAGCCCATGTCTCCTTCCCCATTTTCTCAGCCTATGTCTCCAGCCTCAAATGGCTTATTACACTCCGCAGCTTGGCCCCAGCCTAATGTACCCACCCTTCATCTCCCTGGAAGCAGCCTACAATCCAGTCGCCTGAGGACATCTCTTAGTGCTCGGGACATGCCATTGGAGGATTTAAATATGTTGCTGAATTTTGATTCCCAGAAACAGCTTTTGAATGACATGAATTGTTTCTCTCAGCTCCGGCCTGGTTCTCTCTGTCATGGTGATTTTGGTCGGTCTAAAACTCTAATTCCTTCCAATCTGGAAGAGATTTTTGCCTCTGAGATATCTTCATCGCCTCGGTTTTCTGATTCTGGAGCAGCTGCTGTTTTTTCTCCTACTCACAAATCTGTTCTTTCGCAATTCCAACAAAAACAGAGTATTCCATCACCCATTAATACTGGTGTTTGTTCTCCTAAATCTGTTGAGCACCAATTGCTGCAGGCCTCTTTAAGAACCTTGTCTCCTGGAAGGATGTCACCAAGAAATGCTGATATGATATCCCCTATGGGCACTAGACATCATCCATTTCCTCATCGTGAGAAACATCAAAATCTTCTCAGCTTGAGCCCTAGGGACCTTGGATCCAACATTTTGGCCTCAAATGGAACACCGGTAAGTTCTTGGTCGAAATGGGGTTCTCCCATTGGAAAAGCGGATTGGTCAGTTCATGGAGATGAACTGGCCCGTTTGAGAGGATCATCTTTAGCTGAGCTTGGGAATGGTATTGAGGAGCCTGACTTGTCATGGGTCCAGACTCTTGTTAAAGAATCTCCACCAGAAGTTATGAGAGACAAGCTGACAGTTCCAGCCACTGGCAGTACAGTGCCATGCCCTGTGAGGCTTTGA 2034 44.0 MSCQTTECESSFYNLLEFASDNDVEGFKRLIDYDASFINKSGLWYVRRNGSKQVVQEDRTPLMVAATYGSVNVLKLLLSYPEIDVNLSSGLDRSTALHCAASSGSVNIVEVVHILLSASADPNSVDAKGDRPVDVIYVHPKLHNMKTKLEELLRSNHCQPDEVTLQLSIKTSCSVSSSLSSSPENGFLSSELNSLVVKSADESVNSTTEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHATEELRPLYVSTGSAVPSPRSSTSAPNVMDMAAALSLFPGSPSSLSAMSPSPFSQPMSPSPFSQPMSPASNGLLHSAAWPQPNVPTLHLPGSSLQSSRLRTSLSARDMPLEDLNMLLNFDSQKQLLNDMNCFSQLRPGSLCHGDFGRSKTLIPSNLEEIFASEISSSPRFSDSGAAAVFSPTHKSVLSQFQQKQSIPSPINTGVCSPKSVEHQLLQASLRTLSPGRMSPRNADMISPMGTRHHPFPHREKHQNLLSLSPRDLGSNILASNGTPVSSWSKWGSPIGKADWSVHGDELARLRGSSLAELGNGIEEPDLSWVQTLVKESPPEVMRDKLTVPATGSTVPCPVRL 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1353204 1355237 + Bda009872.1 Bda12g00153 17168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00153 677 Gene3D - 10 157 IPR036770 -
Bda12g00153 677 PANTHER UNKEMPT FAMILY MEMBER 2 664 IPR045234 -
Bda12g00153 677 Pfam Ankyrin repeats (3 copies) 24 125 IPR002110 GO:0005515
Bda12g00153 677 ProSiteProfiles Ankyrin repeat region circular profile. 57 79 - -
Bda12g00153 677 Gene3D - 271 334 - -
Bda12g00153 677 ProSiteProfiles Ankyrin repeat profile. 57 79 IPR002110 GO:0005515
Bda12g00153 677 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Bda12g00153 677 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Bda12g00153 677 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 2 664 - -
Bda12g00153 677 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bda12g00153 677 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bda12g00153 677 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bda12g00153 677 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bda12g00153 677 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Bda12g00153 677 SUPERFAMILY Ankyrin repeat 15 139 IPR036770 -
Bda12g00153 677 MobiDBLite consensus disorder prediction 374 394 - -
Bda12g00153 677 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00458 Bda-Chr5:50910532 Bda12g00153 Bda-Chr12:1353204 0 dispersed
Bda12g00153 Bda-Chr12:1353204 Bda14g00175 Bda-Chr14:1218809 6.59E-148 dispersed
Bda05g01048 Bda-Chr5:58908454 Bda12g00153 Bda-Chr12:1353204 0 transposed
Bda11g00674 Bda-Chr11:6761347 Bda12g00153 Bda-Chr12:1353204 0 transposed
Bda10g00722 Bda-Chr10:41641769 Bda12g00153 Bda-Chr12:1353204 0 wgd
Bda12g00153 Bda-Chr12:1353204 Bda05g00457 Bda-Chr5:50858516 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16756 PF12796 Ank_2 2.10E-10 CL0465 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00153 - - zju:107417606 858.211