Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00161 ATGGAAATAGCTACAATGGATAGTACTGCGAAGTCGCCGGAGGGTGGGGAAGATCGGACGGCGACCGGAGTTCAACCGATCAAGCCTTTACCCTTCAGCAATGGTCTTTTAAAGAGGCATAATCGTCTTAATCATGACAACCTCAACTCCGCCGCTAACTCCGCCGTCGTTTCCTACAAAGAATGCCTGAAAAACCATGCGGCTAGCTTAGGAACTCACGCTTTAGATGGGTGTGGAGAATTCATTCCTTCTCCTTCTGCAACTTCTTCCGATCCCACTTCTTTAAAATGCGCCGCTTGCGGATGTCACCGGAACTTCCACCGCCGCGAGCCCGAAGAGCCGATTTTTCCGGCCCCAACAACACAAGTAATCGAGTACCAGCCTCACCACCGCCACCACCCGCCTCCACCCCCTCAGCCGATCAGCCGGAGTCCGAATTCGGCGTCGCCTCCGCCGATCTCGTCTTCCTACTACCCCTCAGCTCCCCACATGCTTCTGGCTCTATCATCTGGGCTATCGGCCCCTCCGGATCCGACTAATCCGTTCTCGAATGGTCGGAAACGATTCAGAACTAGATTCAGCCTGGATCAGAAAGAGAAAATGCACCAGTTTGCCGAGAGAGTTGGGTGGAGGATGCAGAAGAGAGACGAAGAACTGGTTCAAGAATTCTGCAATGAAATTGGCGTGGAAAAAGTGGTTTTTAAAGTATGGATGCACAATAACAAAAACTCATCTAGCAAGAAGGACGTTAATGGCGGAACGAATACTCTAGAACTCGCTCAAAACGACAACAACTTCGTCGGGAATCTCAATCGCTACGACGACGATGAAAGGGTACATCCCGCCATTAATGGGTCTTCTTCTTCTTCCTGA 873 50.86 MEIATMDSTAKSPEGGEDRTATGVQPIKPLPFSNGLLKRHNRLNHDNLNSAANSAVVSYKECLKNHAASLGTHALDGCGEFIPSPSATSSDPTSLKCAACGCHRNFHRREPEEPIFPAPTTQVIEYQPHHRHHPPPPPQPISRSPNSASPPPISSSYYPSAPHMLLALSSGLSAPPDPTNPFSNGRKRFRTRFSLDQKEKMHQFAERVGWRMQKRDEELVQEFCNEIGVEKVVFKVWMHNNKNSSSKKDVNGGTNTLELAQNDNNFVGNLNRYDDDERVHPAINGSSSSS 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1551063 1551935 - Bda009883.1 Bda12g00161 17176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00161 290 MobiDBLite consensus disorder prediction 133 147 - -
Bda12g00161 290 Gene3D - 179 248 - -
Bda12g00161 290 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Bda12g00161 290 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 243 IPR006455 -
Bda12g00161 290 MobiDBLite consensus disorder prediction 1 36 - -
Bda12g00161 290 MobiDBLite consensus disorder prediction 127 156 - -
Bda12g00161 290 SUPERFAMILY Homeodomain-like 176 245 IPR009057 -
Bda12g00161 290 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Bda12g00161 290 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 5 268 - -
Bda12g00161 290 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Bda12g00161 290 MobiDBLite consensus disorder prediction 268 290 - -
Bda12g00161 290 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 5 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00161 - - - jre:108984667 318.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01353 Bda12g00161 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00161 Bda-Chr12:1551063 Bda13g01690 Bda-Chr13:40265752 1.14E-94 dispersed
Bda12g00161 Bda-Chr12:1551063 Bda07g01353 Bda-Chr7:16358501 2.37E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16757 PF04770 ZF-HD_dimer 1.10E-28 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00161 Bda_Chr12 FPKM 1.949871 1.734551 2.109672 2.160535 2.703317 2.106714 2.433537 3.114976 2.998629