Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00165 ATGGGTAATTTAGAAATCCTTCTAGTGGTCTCATTTTCCCTTTTAGTTCGTTCTGTTAATGGGTATTATGGGGGTTGGATCAACGCCCATGCCACTTTTTATGGTGGAAGTGATGCATCAGGAACAATGGGTGGAGCTTGTGGATATGGGAACCTTTACAGTCAAGGTTATGGGACGAACACTGCAGCTCTAAGCACTCCTTTGTTTAACAATGGACTGACTTGTGGAGCTTGCTATGAACTAAGATGTGTAAATGACCCACAATCGTGTCTTTCTGGATCAATTGTAGTCACTGCAACTAATTTCTGCCCTCCCGGAGGTTGGTGTGATCCTCCTCGTGAACACTTTGATCTCTCCCAACCTGTATTTCAACACATTGCTCAATACAGAGCTGGAATTGTGCCTGTTGCTTACAGAAGGGTAAGTTGCAGAAGAGGTGGAGGGATCAGATTCACGATCAACGGCCATTCTTTCTTCAATCTAGTGCTGGTAACCAACGTCGGTGGAGCAGGAGATGTTCATTCTGTGTCCATCAAAGGGTCTAAAGGTCGGTGGCAACCCATGTCAAGAAATTGGGGCCAGAATTGGCAAAGCAATTCCTACTTGAACGGGCAAAGTCTGTCTTTTGCAGTCACAACCAGTGATGGTCGGACTCTGGTTTCTTACAACGTGGCTCCTTCAGGTTGGTCCTTCGGACAAACCTACTCTGGGTCACAGTTCTGA 723 46.06 MGNLEILLVVSFSLLVRSVNGYYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTPLFNNGLTCGACYELRCVNDPQSCLSGSIVVTATNFCPPGGWCDPPREHFDLSQPVFQHIAQYRAGIVPVAYRRVSCRRGGGIRFTINGHSFFNLVLVTNVGGAGDVHSVSIKGSKGRWQPMSRNWGQNWQSNSYLNGQSLSFAVTTSDGRTLVSYNVAPSGWSFGQTYSGSQF 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1575057 1576057 - Bda009887.1 Bda12g00165 17180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00165 240 Gene3D - 13 144 IPR036908 -
Bda12g00165 240 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Bda12g00165 240 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Bda12g00165 240 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Bda12g00165 240 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Bda12g00165 240 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Bda12g00165 240 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Bda12g00165 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Bda12g00165 240 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Bda12g00165 240 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Bda12g00165 240 PANTHER EXPANSIN-A5 8 240 - -
Bda12g00165 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Bda12g00165 240 SMART dpbb_1 61 138 IPR007112 -
Bda12g00165 240 SUPERFAMILY PHL pollen allergen 146 236 IPR036749 -
Bda12g00165 240 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Bda12g00165 240 Pfam Lytic transglycolase 61 138 IPR009009 -
Bda12g00165 240 Gene3D - 146 240 IPR036749 -
Bda12g00165 240 SUPERFAMILY Barwin-like endoglucanases 25 166 IPR036908 -
Bda12g00165 240 PANTHER EXPANSIN-A15 8 240 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01473 Bda-Chr7:27452304 Bda12g00165 Bda-Chr12:1575057 4.24E-140 dispersed
Bda11g01211 Bda-Chr11:12476870 Bda12g00165 Bda-Chr12:1575057 1.98E-141 dispersed
Bda12g00165 Bda-Chr12:1575057 Bda14g00205 Bda-Chr14:1429819 3.02E-130 dispersed
Bda12g00165 Bda-Chr12:1575057 Bda10g01067 Bda-Chr10:44677129 1.59E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00165 - K20628 vvi:100244103 441.81