Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00175 ATGGCGAAGAAGGAAGAATCTGGTCGAGCAGCTCCCCCACCTCGGCCGACTATTACTTTACCTCCTCGCCCTTCAATGGAAGCTTTTTTTACCGGCGGTCCTGGACCTAGTCCTGGTCCTATGACTCTCGTCTCCAGCTTTTTCGCCGACACCCCGAGCGACTCCCCGGAGTTTCGGTCGTTTTCTCACTTACTCGCCGGAGCTATGGGCTCGCCAATGGCTATGGGTTTCTTTGGATCCAATTCGAGCCAGAATTCTTCTTTCAAGGAGGGAGGTGGTTCGGAGAAGGAACTGGGGTTTAAGCAAAGTAAGCCGGTGAATTTGGTGGTTGCTCGGTCTCCTATGTTTACAGTTCCACCTGGTTTGAGTCCATCTGGGTTGCTTAATTCGCCAGGATTCTTTTCACCTCAGAGTCCCTTTGGAATGTCCCACCAGCAGGTTCTTGCTCAAGTTACCGCTCAAGCTGCCCTAGCCCAGTCTCACATGCACATGCAAGCGCCATCAGATTATCCGCCATCTTCAGCCCCTCCAATGGATTCATTGGCATTGATACGACATCCATCGGTTAATGTCGACGAAACTTCACAAAAGGCAATATCAGATCCCAAAAGTTCTATGATCGAATCAGCAGAGGTCTCTCACTCTGACAGGAAATATCAACCTCCTTCACATGCCGGAGATAAACCAGCAGATGATGGATACAACTGGAGAAAGTATGGTCAGAAGCAGGTTAAAGGCAGTGAATTTCCACGAAGCTATTATAAATGCTCACATCAGAATTGCCCCGTCAAAAAGAAGGTTGAGCGTTCTCCCGATGGCCATATTACTGAAATTATCATCAAAGGCCAGCACAGCCATGATCCACCTCAACCCAATAAACGTTCGAAAGATGGTGGTGAAGCAACTGGCCTTGTACGTTCTCTCCCTGTGACAGAAATCAACTCACATATCAGCACAGGAAATTTCAAAAAGTCAAGCGAAGCTGTACAAGCAGGTTCCAGTGACAGCGAAGAATTGCGTGAAATAGAGAGAACAGAAGACAGGGATGTTGATGAGCCAAATCCAAAAAGGCAGAACATAGATGGGGGGACATCTGGGGTTAGTTCGTCTACAAAAACACTTACAGAACCAAAAATCATAGTTCAAACACGAAGTGAGGTTGATCTTTTAGATGATGGCTATAGATGGCGCAAGTACGGCCAAAAGGTGGTCAAAGGAAATCCTTACCCAAGGAGCTACTATAGATGCACTCACGTCGGATGCAATGTTCGTAAGCACGTTGAGAGAGCCTCAACAGATCCCAAGGCCGTAATAACAACGTATGAAGGAAAACACAATCACGACCTTCCAGCAGCAAGAAGTAGTAGCCACAACACAGCCAACAACAACTCCCTGGAAATTAAACCACTCAGGGTTGTGGCTCAAAAACACCCATTACTCAAAGACATGGATTTTGGAACTAATGAACAGAGACCTGCTGTTTTGCAGCTTAAAGAAGAACAAATTACAGTATAA 1515 46.67 MAKKEESGRAAPPPRPTITLPPRPSMEAFFTGGPGPSPGPMTLVSSFFADTPSDSPEFRSFSHLLAGAMGSPMAMGFFGSNSSQNSSFKEGGGSEKELGFKQSKPVNLVVARSPMFTVPPGLSPSGLLNSPGFFSPQSPFGMSHQQVLAQVTAQAALAQSHMHMQAPSDYPPSSAPPMDSLALIRHPSVNVDETSQKAISDPKSSMIESAEVSHSDRKYQPPSHAGDKPADDGYNWRKYGQKQVKGSEFPRSYYKCSHQNCPVKKKVERSPDGHITEIIIKGQHSHDPPQPNKRSKDGGEATGLVRSLPVTEINSHISTGNFKKSSEAVQAGSSDSEELREIERTEDRDVDEPNPKRQNIDGGTSGVSSSTKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYRCTHVGCNVRKHVERASTDPKAVITTYEGKHNHDLPAARSSSHNTANNNSLEIKPLRVVAQKHPLLKDMDFGTNEQRPAVLQLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1652777 1660772 - Bda009897.1 Bda12g00175 17190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00175 504 MobiDBLite consensus disorder prediction 308 333 - -
Bda12g00175 504 PANTHER WRKY PROTEIN 10 503 - -
Bda12g00175 504 MobiDBLite consensus disorder prediction 159 239 - -
Bda12g00175 504 Gene3D WRKY domain 218 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 MobiDBLite consensus disorder prediction 189 209 - -
Bda12g00175 504 MobiDBLite consensus disorder prediction 280 294 - -
Bda12g00175 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 MobiDBLite consensus disorder prediction 1 36 - -
Bda12g00175 504 MobiDBLite consensus disorder prediction 280 373 - -
Bda12g00175 504 MobiDBLite consensus disorder prediction 210 235 - -
Bda12g00175 504 Pfam WRKY DNA -binding domain 231 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 MobiDBLite consensus disorder prediction 334 356 - -
Bda12g00175 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00175 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 503 IPR044810 GO:0003700
Bda12g00175 504 MobiDBLite consensus disorder prediction 358 373 - -
Bda12g00175 504 SUPERFAMILY WRKY DNA-binding domain 228 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g01335 Bda12g00175 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01738 Bda-Chr3:56793694 Bda12g00175 Bda-Chr12:1652777 1.47E-76 dispersed
Bda05g00685 Bda-Chr5:55155254 Bda12g00175 Bda-Chr12:1652777 1.75E-22 dispersed
Bda12g00175 Bda-Chr12:1652777 Bda12g00951 Bda-Chr12:40590110 7.61E-81 dispersed
Bda09g00897 Bda-Chr9:25106065 Bda12g00175 Bda-Chr12:1652777 1.43E-50 transposed
Bda12g00175 Bda-Chr12:1652777 Bda07g01335 Bda-Chr7:16108565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16761 PF03106 WRKY 7.30E-26 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00175 - - csv:101223114 685.256