Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00192 ATGGGTTTAGCTCAATCTGCAGACCTATCTTCTCAAAGATCCCATGAAAGTGCAGCAGAAATGGAAAAAAGTGGTGGGTTTTCGAAGAATACTGGTTTTTTGTTACGCAGTTCGATCTACAAACCAGAAATTTCTCGGTCTGTCATAAACTTCAAGGAGCAGATCGATCGGAATCTAACCCAGTTAAGCATGGAGTCATCTTTACTGAGTTTTGGCCAAACCCACCGGGTTGCTCAAGAAGACTATTTCAACTGGCCAGCAGAAGAAGAAAGCTTTAACAATGGCAGTCAATTGAGCCAGATGATCAGCTCTCCTAACCTACGCCTTTTGGACGACTTAAACTGCTTTCAGAAAGCTTCCAGCTTTACTCCAATGGCGATTCCTTCAAAAGAGAATCAAAACGGATCAGATGGGTTCAGCAATTATTGGCTATATTCTGAAGAATCAGATGCTATTGGTGAAGAGGAGTCAAGAACTGATTTTGAACTAACCCCACAGAAACGACCCCATCTGGGGGAAAGCGAGCAAACTATGAAGAAACAATGCAATAGTTCAACTAAGAAGACAAAACCAAAGACAAATCCAGCCAAAGATCCGCAAAGTATAGCAGCAAAGAATCGACGAGAGCGGATTAGTGAGAGATTGAAGATTCTGCAAGAACTAGTTCCAAATGGATCCAAGGTTGATTTGGTAACTATGCTGGAGAAAGCAATTAGCTACGTTAAATTTCTGCAGCTTCAAGTGAAGATATTGGCGACAGATGAATTCTGGCCAGTTCAAGGAGGGAAAGCTCCTGATATTTCTCAAGTGAGGGACGCCATTGATGCAATTCTTTCTTCACAAAGAGAGAGAAGCTCAAGCTCAAACAGTACAAAGTAA 879 41.87 MGLAQSADLSSQRSHESAAEMEKSGGFSKNTGFLLRSSIYKPEISRSVINFKEQIDRNLTQLSMESSLLSFGQTHRVAQEDYFNWPAEEESFNNGSQLSQMISSPNLRLLDDLNCFQKASSFTPMAIPSKENQNGSDGFSNYWLYSEESDAIGEEESRTDFELTPQKRPHLGESEQTMKKQCNSSTKKTKPKTNPAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVRDAIDAILSSQRERSSSSNSTK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1825543 1826851 - Bda009918.1 Bda12g00192 17207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00192 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Bda12g00192 292 MobiDBLite consensus disorder prediction 1 31 - -
Bda12g00192 292 Gene3D - 189 252 IPR036638 GO:0046983
Bda12g00192 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 253 IPR036638 GO:0046983
Bda12g00192 292 MobiDBLite consensus disorder prediction 156 175 - -
Bda12g00192 292 MobiDBLite consensus disorder prediction 154 205 - -
Bda12g00192 292 SMART finulus 201 250 IPR011598 GO:0046983
Bda12g00192 292 MobiDBLite consensus disorder prediction 176 200 - -
Bda12g00192 292 CDD bHLH_AtIND_like 196 258 - -
Bda12g00192 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 283 - -
Bda12g00192 292 Pfam Helix-loop-helix DNA-binding domain 202 245 IPR011598 GO:0046983
Bda12g00192 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01091 Bda-Chr7:12799053 Bda12g00192 Bda-Chr12:1825543 2.04E-150 dispersed
Bda08g00680 Bda-Chr8:7225733 Bda12g00192 Bda-Chr12:1825543 4.68E-22 dispersed
Bda12g00192 Bda-Chr12:1825543 Bda01g01945 Bda-Chr1:55838157 1.05E-17 dispersed
Bda12g00192 Bda-Chr12:1825543 Bda01g01589 Bda-Chr1:51739577 4.81E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16762 PF00010 HLH 9.30E-08 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00192 - - tcc:18601899 239.195