Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00203 ATGGCGTTTCTGTTTATACCCATGTTTAGATCAGTCTCCAAGTTCTTAAGTTGTACCATTTTGGTCGAGCTCCTTCTTTTCTTCGCAAGCTTTACTTCGACAGAAGCATATGATGCGCTTGATCCAACTGCAAACATCACCATCAAATGGGACATTATTGCTTGGACTGCTGATGGCTACGTGGCTACCGTGACGATATACAACTTTCAGCAATATCGTCATGTTCAGGCGCCGGGATGGTTGCTAGGATGGACGTGGGCGAAGAGGGAGATAATCTGGAGCATGTTGGGAGGTCAAGCCACGGAGCAAGGAGATTGCTCGAGATTTAAGGGGAATATTCCTCATTGCTGCAAAAAGAATCCGACCGTCGTTGATCTTCTGCCCGGAACCCCTTACAACCAACAAGTTGCCAATTGTTGTAGAGGTGGGGTACTTGCCTCGTGGGTTCAAGACCCGGCCAACTCGGCTAGCTCGTTTCAACTCAATGTCGGTTCTTCAGGAACCACCAATAAGACAGTGAGAGTGCCGAAGAACTTCACTTTGCATGCACCGGGGCCTGGATATACTTGTGGACCTGGAAAGATAGTTAAACCGAGTAAATTTATGACCACAGATAAAAGAAGAGTCACACAAGCGTTGATGACATGGAACGTTACATGCACATATTCACAATTTCTGGCTGAGAGAACTCCTACTTGTTGCGTCTCACTGTCGTCTTTCTACAATCGCACGATTGTCTCCTGCCCGACATGCTCCTGTGGTTGCCAAAGCAATATAAGTCGGTCTGGTGGCTGTATTGCGGAAAAATCGTCACATTTGGCATCGGTCGTTTCAAATCCCGGCACAAAAAATACGCCTATGATTCAATGTACGAGCCATATGTGTCCGATTAGAGTTCATTGGCATGTCAAACTCAACTATAAAGAATATTGGCGGGTAAAGATTACAGTCACTAATTTCAATTACGCGATGAACTATTCCTGA 984 45.73 MAFLFIPMFRSVSKFLSCTILVELLLFFASFTSTEAYDALDPTANITIKWDIIAWTADGYVATVTIYNFQQYRHVQAPGWLLGWTWAKREIIWSMLGGQATEQGDCSRFKGNIPHCCKKNPTVVDLLPGTPYNQQVANCCRGGVLASWVQDPANSASSFQLNVGSSGTTNKTVRVPKNFTLHAPGPGYTCGPGKIVKPSKFMTTDKRRVTQALMTWNVTCTYSQFLAERTPTCCVSLSSFYNRTIVSCPTCSCGCQSNISRSGGCIAEKSSHLASVVSNPGTKNTPMIQCTSHMCPIRVHWHVKLNYKEYWRVKITVTNFNYAMNYS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2010972 2012775 - Bda009930.2 Bda12g00203 17218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00203 327 PIRSF COBRA 8 327 IPR006918 GO:0010215|GO:0031225
Bda12g00203 327 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Bda12g00203 327 PANTHER COBRA-LIKE PROTEIN 12 326 - -
Bda12g00203 327 PANTHER PROTEIN COBRA 12 326 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00203 - - - pvy:116109720 572.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00203 Bda-Chr12:2010972 Bda15g01047 Bda-Chr15:19498647 1.77E-97 dispersed
Bda12g00203 Bda-Chr12:2010972 Bda12g00205 Bda-Chr12:2018623 1.88E-154 proximal
Bda12g00203 Bda-Chr12:2010972 Bda07g01033 Bda-Chr7:12187795 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00513 . 21 410 COBRA Gene Family AT5G60920 82.0 2.1e-209 724.9
Bda07g01033 . 14 407 COBRA Gene Family AT5G60920 76.6 2.9e-198 688.0
Bda12g00205 . 37 434 COBRA Gene Family AT5G60920 67.2 1.8e-176 615.5
Bda12g00203 . 48 327 COBRA Gene Family AT5G60920 74.6 2.6e-138 488.8
Bda15g00631 BCT 267 499 COBRA Gene Family AT5G60920 61.3 3.8e-89 325.5
Bda06g00512 BCT,CCT 43 219 COBRA Gene Family AT5G60920 67.2 1.5e-74 276.9
Bda06g00513 . 7 422 COBRA Gene Family AT3G02210 74.9 6.2e-202 700.3
Bda07g01033 . 1 417 COBRA Gene Family AT3G02210 73.3 1.1e-198 689.5
Bda12g00205 . 2 433 COBRA Gene Family AT3G02210 62.8 1.7e-175 612.5
Bda12g00203 . 11 327 COBRA Gene Family AT3G02210 73.1 4.1e-145 511.5
Bda15g00631 BCT 256 484 COBRA Gene Family AT3G02210 59.8 4.0e-84 308.9
Bda06g00512 BCT,CCT 15 219 COBRA Gene Family AT3G02210 61.5 3.4e-75 279.3
Bda07g01033 . 1 416 COBRA Gene Family AT3G29810 75.4 1.7e-199 692.2
Bda06g00513 . 4 408 COBRA Gene Family AT3G29810 74.9 3.2e-195 677.9
Bda12g00205 . 18 416 COBRA Gene Family AT3G29810 66.2 9.1e-174 606.7
Bda12g00203 . 30 327 COBRA Gene Family AT3G29810 72.9 8.6e-140 493.8
Bda15g00631 BCT 267 480 COBRA Gene Family AT3G29810 63.9 1.0e-84 310.8
Bda06g00512 BCT,CCT 13 219 COBRA Gene Family AT3G29810 61.1 2.1e-77 286.6
Bda12g00205 . 23 345 COBRA Gene Family AT5G15630 85.1 2.8e-178 621.3
Bda06g00513 . 7 331 COBRA Gene Family AT5G15630 72.8 3.9e-148 521.2
Bda07g01033 . 2 325 COBRA Gene Family AT5G15630 68.3 2.2e-143 505.4
Bda12g00203 . 31 327 COBRA Gene Family AT5G15630 68.1 2.0e-128 455.7
Bda06g00512 BCT,CCT 28 219 COBRA Gene Family AT5G15630 68.2 5.4e-81 298.1
Bda15g00631 BCT 267 408 COBRA Gene Family AT5G15630 81.8 3.0e-71 265.8
Bda06g00513 . 17 197 COBRA Gene Family AT5G60950 59.1 7.5e-62 233.8
Bda07g01033 . 4 190 COBRA Gene Family AT5G60950 56.9 1.3e-61 233.0
Bda12g00203 . 19 224 COBRA Gene Family AT5G60950 53.9 3.7e-61 231.5
Bda06g00512 BCT,CCT 1 219 COBRA Gene Family AT5G60950 53.0 9.1e-60 226.9
Bda12g00205 . 15 213 COBRA Gene Family AT5G60950 54.0 1.2e-56 216.5
Bda07g01033 . 1 395 COBRA Gene Family AT1G09790 54.4 1.0e-132 470.3
Bda06g00513 . 5 402 COBRA Gene Family AT1G09790 53.6 6.6e-132 467.6
Bda12g00205 . 25 416 COBRA Gene Family AT1G09790 52.4 2.4e-129 459.1
Bda12g00203 . 32 327 COBRA Gene Family AT1G09790 51.0 5.3e-89 325.1
Bda15g00631 BCT 268 479 COBRA Gene Family AT1G09790 57.5 1.3e-74 277.3
Bda08g00305 BCT 31 628 COBRA Gene Family AT4G16120 67.3 1.1e-255 879.4
Bda03g01159 BCT 33 626 COBRA Gene Family AT4G16120 64.3 1.5e-244 842.4
Bda12g00896 . 54 650 COBRA Gene Family AT4G16120 56.1 2.5e-212 735.3
Bda08g00305 BCT 9 647 COBRA Gene Family AT3G16860 62.0 4.1e-239 824.3
Bda03g01159 BCT 11 639 COBRA Gene Family AT3G16860 60.6 2.0e-233 805.4
Bda12g00896 . 51 664 COBRA Gene Family AT3G16860 52.8 1.2e-201 699.9
Bda08g00305 BCT 24 647 COBRA Gene Family AT5G49270 60.6 5.1e-237 817.4
Bda03g01159 BCT 1 625 COBRA Gene Family AT5G49270 58.2 6.3e-227 783.9
Bda12g00896 . 50 669 COBRA Gene Family AT5G49270 52.3 3.1e-202 701.8
Bda12g00896 . 22 650 COBRA Gene Family AT3G20580 64.6 2.0e-257 885.2
Bda08g00305 BCT 27 628 COBRA Gene Family AT3G20580 54.8 2.0e-204 709.1
Bda03g01159 BCT 29 626 COBRA Gene Family AT3G20580 53.0 5.2e-197 684.5
Bda12g00896 . 25 673 COBRA Gene Family AT4G27110 60.6 3.8e-240 827.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016210 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00203 Bda_Chr12 FPKM 6.905569 8.055392 5.854803 5.497444 6.060268 7.038445 6.823133 7.160993 6.587274