Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00204 ATGAATGCGTCTAGCTCCCAATCTCAATCGTTCGGTCAGACCGAAATCAACTGGGACAAGCTTGATAAGACTAAATTTTATGTCATAGGAGCTGGTCTCTTTACAGGGGTTACTGTCGCCCTTTATCCAGTTTCTCTGGTAAAAACAAGGCTGCAAGTTGCTTCAAAGGAAGCTGTGGATAGAAAAGCATTTTCTGTTTTAAAGGGGATACTAAAAACTGATGGAGTTCCTGGTCTTTATAGAGGGTTTGGAACGGTGATCATTGGTGCGATTCCAACGAGAATCCTTTTCTTAACTGCTTTAGAGACAACCAAAGTAGGCACCTTTAAATTTGTTGAGCCACTTAAGTTATCTGAACCAACGAAGGCAGCTATCGCAAATGGATTAGCGGGCATGTCAGCATCTCTTTGTTCTCAGGCTGTGTTTGTTCCAATTGATGTGATTAGTCAGAAATTGATGGTGCAAGGATACTCTGGTAATGCCAAATATAGTGGGGGTTTGGATGTTGCCCAAAAGCTTATAAAATCAAATGGGATAAGGGGATTATATAAGGGGTTTGGTTTATCTGTCCTCACTTACTCGCCATCTAGTGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGCATCATCTGGAGGCTTCTGGGTCAAGGTACTAATCTTGAGGAATCTGTTCCTGGCGAGGCAAAATTAATGTTAGTTCAAGCTAGTGGAGGAATAATAGCAGGTGCAACAGCTTCCTGCATCACCACACCACTGGACACAATTAAAACTCGCCTACAGGTTATGGAGCATGAAAGAAGAAACACTGCGACAGAAGTTGTCAGAGGCTTAATTAGAGAGGAAGGGTGGTCAGGTTTATACAGGGGGTTGGGTCCTAGATTTTTCAGCATGTCTGCATGGGGAACCTCAATGATACTGGCTTATGAATATTTGAGTATGATCTCTTCCTCCTTCCACACTCCTTTTACTACTAATTAA 981 42.61 MNASSSQSQSFGQTEINWDKLDKTKFYVIGAGLFTGVTVALYPVSLVKTRLQVASKEAVDRKAFSVLKGILKTDGVPGLYRGFGTVIIGAIPTRILFLTALETTKVGTFKFVEPLKLSEPTKAAIANGLAGMSASLCSQAVFVPIDVISQKLMVQGYSGNAKYSGGLDVAQKLIKSNGIRGLYKGFGLSVLTYSPSSAVWWASYGSSQRIIWRLLGQGTNLEESVPGEAKLMLVQASGGIIAGATASCITTPLDTIKTRLQVMEHERRNTATEVVRGLIREEGWSGLYRGLGPRFFSMSAWGTSMILAYEYLSMISSSFHTPFTTN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2014370 2017583 + Bda009931.1 Bda12g00204 17219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00204 326 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Bda12g00204 326 Pfam Mitochondrial carrier protein 32 106 IPR018108 -
Bda12g00204 326 Pfam Mitochondrial carrier protein 235 312 IPR018108 -
Bda12g00204 326 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Bda12g00204 326 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Bda12g00204 326 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085
Bda12g00204 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 23 107 IPR018108 -
Bda12g00204 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
Bda12g00204 326 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 316 - -
Bda12g00204 326 Gene3D Mitochondrial carrier domain 27 320 IPR023395 -
Bda12g00204 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 315 IPR018108 -
Bda12g00204 326 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 316 - -
Bda12g00204 326 SUPERFAMILY Mitochondrial carrier 19 312 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00133 Bda-Chr3:1171354 Bda12g00204 Bda-Chr12:2014370 1.98E-86 dispersed
Bda10g00867 Bda-Chr10:43170391 Bda12g00204 Bda-Chr12:2014370 7.13E-88 dispersed
Bda12g00204 Bda-Chr12:2014370 Bda13g01526 Bda-Chr13:38311150 1.27E-06 dispersed
Bda02g00881 Bda-Chr2:49183777 Bda12g00204 Bda-Chr12:2014370 1.26E-13 transposed
Bda09g01563 Bda-Chr9:47179361 Bda12g00204 Bda-Chr12:2014370 2.15E-15 transposed
Bda12g00204 Bda-Chr12:2014370 Bda07g01034 Bda-Chr7:12192340 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00204 K15121 - cit:102614745 508.449