Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00205 ATGTTTTTTTTAGATGAATTTTCTGGTTTTTTTTTTCCTCAACTTCTTCTGTTTTTGTTTCTCATTTCAGTGGCTTATGATCCTTTGGATCCCAATGGAAATATAACAATTAAGTGGGATGTAATGTCCTGGACCTCAGATGGCTATGTGGCAGTAGTGACGATGAACAATTTCCAAATGTACCGACATATCATGAGCCCGGGGTGGACACTCGGGTGGACGTGGGCAAAGAAAGAGGTCATATGGTCCGTGGCCGGGGCTCAAGCGACCGAGCAAGGTGACTGCTCAAAGTTCAAAGGAAACATCCCCCATTGCTGCAAGAAGAGTCCCACAGTTGTGGACTTGCTGCCTGGAGTCCCTTACAATCAGCAATTCGCCAATTGCTGCAAAGGTGGAGTTGTGGCTGCTTGGGGTCAAGATCCTCAGGCTTCGGTCTCGGCCTTCCAGATAAGTGTCGGCCTTTCCGGCTCCTCGAATAAGACTGTCAAGCTCCCGAAGAACTTCACCCTGTTAGGCCCCGGTCCCGGCTACACGTGCGGGCCTGCTAAGATCGTCCCTTCCACAACCTTTCTCACCCCGGATCGTCGGCGAAAAACTCAAGCTTTGATGACATGGAACGTAACGTGCACTTATTCGCAATTTCTCGCCCGGAAAAACCCGAGTTGCTGTGTTTCTTTCTCGTCTTTCTACAACGAAACTATCACCCCTTGCCCATCTTGTGCATGTGGCTGCCCAGACAAAAATAATTGTGTCAAGAGCGATTCCAAGATTCTTACAATGGTGGGAATAAATACGCCGAAGAAAGACAACTCCCCTCTTCTACAATGCACGCATCATATGTGTCCCGTTCGAGTTCATTGGCACGTCAAGCAAAACTACAAAGACTACTGGCGGGCAAAGATCGCTATCACCAACTTCAACTATCGAAAGAACCACACTCTCTGGTCTCTCGTCATTCAGCACCCGAATCTCAACAACGTAACCCAAGTTTTCAGCTTCGATTACAAGCCACTCGTTCCCTACGAGTCAATAAATGACACAGGAATGTTTTATGGCATGAAATACTATAATGACCTGTTAATGGAAGCTGGACCATTTGGGAATGTTCAGTCTGAGGTGCTTCTCCAAAAAGACGAGAACACTTTCACCTTCAAGCAGGGATGGGCATTTCCTCGGAAAGTTTACTTCAACGGCGACGAATGCATGCTGCCACCACCCGATCAATATCCTTTTCTACCTAATTCTGCAGGCCGGAATCCAATCACCTACTTCTTTTCAACCATGTCGATGCTCTTCTTATTCATGGCAATCTACTAA 1317 47.0 MFFLDEFSGFFFPQLLLFLFLISVAYDPLDPNGNITIKWDVMSWTSDGYVAVVTMNNFQMYRHIMSPGWTLGWTWAKKEVIWSVAGAQATEQGDCSKFKGNIPHCCKKSPTVVDLLPGVPYNQQFANCCKGGVVAAWGQDPQASVSAFQISVGLSGSSNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPSCCVSFSSFYNETITPCPSCACGCPDKNNCVKSDSKILTMVGINTPKKDNSPLLQCTHHMCPVRVHWHVKQNYKDYWRAKIAITNFNYRKNHTLWSLVIQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKYYNDLLMEAGPFGNVQSEVLLQKDENTFTFKQGWAFPRKVYFNGDECMLPPPDQYPFLPNSAGRNPITYFFSTMSMLFLFMAIY 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2018623 2020531 - Bda009932.1 Bda12g00205 17220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00205 438 PIRSF COBRA 6 438 IPR006918 GO:0010215|GO:0031225
Bda12g00205 438 PANTHER COBRA-LIKE PROTEIN 16 434 - -
Bda12g00205 438 PANTHER PROTEIN COBRA 16 434 IPR006918 GO:0010215|GO:0031225
Bda12g00205 438 Coils Coil 438 438 - -
Bda12g00205 438 Pfam COBRA-like protein 49 212 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00512 Bda-Chr6:7363540 Bda12g00205 Bda-Chr12:2018623 1.70E-100 dispersed
Bda07g01033 Bda-Chr7:12187795 Bda12g00205 Bda-Chr12:2018623 0 dispersed
Bda08g00305 Bda-Chr8:3180030 Bda12g00205 Bda-Chr12:2018623 1.59E-34 dispersed
Bda12g00205 Bda-Chr12:2018623 Bda15g00631 Bda-Chr15:9445757 7.92E-135 dispersed
Bda12g00203 Bda-Chr12:2010972 Bda12g00205 Bda-Chr12:2018623 1.88E-154 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00205 - - qsu:112004749 812.757