Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00210 | ATGGGTTCGGTTTGCTGCTGTTTACGTGTCGAAGATTTTGAAGATTATGTTAATCCAAACAATTCTGCATATAGGAACTGTATGTGTCTTCGTTGCTTCGTTCGTAACTTCCTAAATGTGTATACGTCACTTTTCAGAAGAGGACAAGTGCGTTCCTTATCTTCATCGATTCAAGGGGCTTCATCTTTCACTTCATCTGCATCTTTTGACAACTCCTTGTCTGATATGTATCATTCCCCCCCGAGGCCGTTGCCTTATGATGCTGACCAGAGATATGTACGGTTGCAACGCGATGGACTAGTTTCGAGGCATGACAAGGGCTCGAGCCTCTTACACGAAGATTCAGAGCCTCTGAGAAATGAAATTGATATTGATACCGAGCCTTTGAGGACAGCAGACAAGTTGAATGGATCTACCGGCGAAGATGAATCGAAAGATGACTTGAGGAAGTCCTCGTTTAAGTTCTCTTCTGCAACAAGTACCATTTCGGTTGGGAAACTTTATACGTTTTTGGAAGATGAGGATGTTTGTCCCACCTGTCTTGAAGAATATACTCCAGAAAATCCCAAGATAATGACCAAATGCTCTCATCATTTTCACCTCGGATGTATTTACGAGTGGATGGAAAGAAGCGAAAGCTGTCCGGTTTGTGGCCAGGTATCTTTCCTTATCCAATTTCGGCCAATTCTTTCTTTTTTATATAAATAG | 708 | 42.09 | MGSVCCCLRVEDFEDYVNPNNSAYRNCMCLRCFVRNFLNVYTSLFRRGQVRSLSSSIQGASSFTSSASFDNSLSDMYHSPPRPLPYDADQRYVRLQRDGLVSRHDKGSSLLHEDSEPLRNEIDIDTEPLRTADKLNGSTGEDESKDDLRKSSFKFSSATSTISVGKLYTFLEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGQVSFLIQFRPILSFLYK | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2055104 | 2056130 | - | Bda009937.1 | Bda12g00210 | 17225 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00210 | 235 | SUPERFAMILY | RING/U-box | 170 | 223 | - | - | |
| Bda12g00210 | 235 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 221 | - | - | |
| Bda12g00210 | 235 | MobiDBLite | consensus disorder prediction | 104 | 146 | - | - | |
| Bda12g00210 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 221 | IPR013083 | - | |
| Bda12g00210 | 235 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
| Bda12g00210 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
| Bda12g00210 | 235 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 221 | - | - | |
| Bda12g00210 | 235 | SMART | ring_2 | 177 | 217 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda07g00483 | Bda-Chr7:6067217 | Bda12g00210 | Bda-Chr12:2055104 | 3.17E-24 | dispersed | |
| Bda11g00370 | Bda-Chr11:4052956 | Bda12g00210 | Bda-Chr12:2055104 | 1.49E-50 | dispersed | |
| Bda12g00210 | Bda-Chr12:2055104 | Bda13g00508 | Bda-Chr13:6048273 | 2.68E-60 | dispersed | |
| Bda01g01195 | Bda-Chr1:47220769 | Bda12g00210 | Bda-Chr12:2055104 | 1.67E-105 | wgd | |
| Bda12g00210 | Bda-Chr12:2055104 | Bda07g01037 | Bda-Chr7:12219786 | 8.78E-116 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00210 | - | - | mnt:21401143 | 324.324 |