Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00269 ATGTTGGACGGAAACCCGCGGCTGAACTTGGCGTCGTTCGTCACCACTTGGATGGAGCCGGAATGCGATAAGCTCATCATGGACTCCATTAACAAGAACTACGTCGACATGGATGAGTATCCTGTCACTACCGAGCTTCAGAACCGGTGTGTGAACATTATAGCTCATCTGTTCAATGCCCCACTCGGTGAATCCGAGGCGGCTGTCGGAGTTGGAACGGTGGGGTCGTCGGAGGCCATTATGTTGGCCGGCTTAGCATTCAAGAGGAAGTGGCAAAATAAGAGAAAGGCCGAGGGCAAACCCTACGATAAACCAAATATTGTCACCGGAGCTAACGTTCAGGTATGCTGGGAGAAATTTGCAAGATACTTTGAAGTGGAGCTGAAGGAGGTGAAACTGAGAGAAGGATACTACGTTATGGATCCAGAAAAAGCTGTAGAAATGGTGGATGAAAACACTATCTGTGTTGCTGCTATTTTGGGCTCTACCCTCAATGGTGAGTTTGAGGACGTCAAGCTATTGAATGATCTCTTGGTGAAGAAGAACAACCAAACTGGATGGGACACACCCATTCACGTTGACGCCGCAAGCGGAGGGTTCATAGCGCCATTTCTGTACCCAGAGCTGGAGTGGGACTTTCGTTTGGAACAGGTGAAGAGCATCAACGTCAGCGGCCACAAATATGGGCTGGTCTACGCCGGGATCGGGTGGGTGATCTGGAGAAGCAAGCAGGATTTGCCGGAAGAACTCATCTTCCATATCAACTATCTCGGCGCCGATCAACCCACCTTCACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTATCAACTCATTCGCCTTGGCCATGAGGGATATAGAAACGTGATGGAAAATTGTCGCGACAACATGATCGTGCTCAAAGAAGGGTTAGAAAAAACTGGGCGATTCAACATAGTCTCGAAGGATGAAGGAGTCCCCCTCGTTGCCTTCTCCTTGAAAGACAACCTCCGACACAATGAGTTCGAGGTTTCCGAGATGTTGAGGCGCTTCGGATGGATCGTTCCGGCCTACACAATGCCTCCAGATGCAGAACACATCACTGTCCTTCGAGTCGTCATTCGAGAAGACTTCTCGCGCACACTGGCAGAGCGGCTCGTGTTTGACATCGAGAAAGTGTTGCACGAGCTCGACACTCTACCGGCTAGGGTTACCGCCAAGTTAGCGATTGCCCAGGAAGAGACGACCCAATGCAATGGCAATGGCACCGTAGTGGCAAAGAAAAGTGCTCTTGAGTTGCAGAGGGAGATCACTGCAACCTGGAAGAAGTTTGTTCTTGAGAGTAAGAAGACCAATGGCATTAAGACCAATGGCATTTGCTAG 1374 49.78 MLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLGESEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVKKNNQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLEQVKSINVSGHKYGLVYAGIGWVIWRSKQDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRDNMIVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNLRHNEFEVSEMLRRFGWIVPAYTMPPDAEHITVLRVVIREDFSRTLAERLVFDIEKVLHELDTLPARVTAKLAIAQEETTQCNGNGTVVAKKSALELQREITATWKKFVLESKKTNGIKTNGIC 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2872967 2875744 - Bda010008.1 Bda12g00269 17284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00269 457 Gene3D - 1 15 - -
Bda12g00269 457 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 394 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bda12g00269 457 CDD DOPA_deC_like 9 389 - -
Bda12g00269 457 PANTHER GLUTAMATE DECARBOXYLASE 1 451 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bda12g00269 457 Gene3D - 16 310 IPR015421 GO:0003824
Bda12g00269 457 Gene3D - 311 398 - -
Bda12g00269 457 SUPERFAMILY PLP-dependent transferases 1 394 IPR015424 -
Bda12g00269 457 PANTHER GLUTAMATE DECARBOXYLASE 1 451 - -
Bda12g00269 457 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 331 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00269 Bda-Chr12:2872967 Bda12g00270 Bda-Chr12:2905253 0 tandem
Bda06g00854 Bda-Chr6:11778423 Bda12g00269 Bda-Chr12:2872967 0 transposed
Bda08g00181 Bda-Chr8:1643030 Bda12g00269 Bda-Chr12:2872967 3.71E-22 transposed
Bda08g00204 Bda-Chr8:1847578 Bda12g00269 Bda-Chr12:2872967 3.06E-14 transposed
Bda12g00324 Bda-Chr12:3571338 Bda12g00269 Bda-Chr12:2872967 0 transposed
Bda01g01124 Bda-Chr1:46132233 Bda12g00269 Bda-Chr12:2872967 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00269 K01580 - csv:101216119 815.068