Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00270 ATGGTGCTCTCTAAGACGGCGTCGGAAAGCGATGTGTCGATCCATTCGACCTTTGCGTCTCGCTATGTCCGAGCCTCCCTTCCGAGGTTCAAGATGCCGGAACTGTCGATCCCGAAAGAGGCGGCTTACCAGATTATCAACGACGAGTTGATGTTGGACGGAAACCCGCGGCTGAACTTGGCGTCGTTCGTCACCACTTGGATGGAGCCGGAATGCGATAAGCTCATCATGGACTCCATTAACAAGAACTACGTCGACATGGATGAGTATCCTGTCACTACCGAGCTTCAGAACCGGTGTGTGAACATTATAGCTCATCTGTTCAATGCCCCACTCGGTGAATCCGAGGCGGCTGTCGGAGTTGGAACGGTGGGGTCGTCGGAGGCCATTATGTTGGCCGGCTTAGCATTCAAGAGGAAGTGGCAAAATAAGCGAAAGGCCGAGGGCAAACCCTACGACAAACCAAATATTGTCACCGGAGCTAATGTTCAGGTATGCTGGGAGAAATTTGCAAGATACTTTGAAGTGGAGCTGAAGGAGGTGAAACTGAGAGAAGGATACTACGTTATGGATCCAGAAAAAGCTGTAGAAATGGTGGATGAAAACACCATCTGTGTTGCTGCTATTTTGGGCTCTACCCTCAATGGTGAGTTTGAGGATGTCAAGCTATTGAATGATCTCTTGGTGAAGAAGAACAGCCAAACTGGATGGGACACACCCATTCACGTTGACGCCGCAAGCGGAGGGTTCATAGCGCCATTTCTGTACCCAGAGCTGGAGTGGGACTTTCGTTTGGAACAGGTGAAGAGCATCAACGTCAGCGGCCACAAATATGGGCTGGTCTACGCCGGGATCGGGTGGGTGATTTGGAGAAGCAAGCAGGATTTGCCGGAAGAACTCATCTTCCATATCAACTATCTCGGCGCCGATCAACCCACCTTCACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTATCAACTCATTCGCCTTGGCCATGAGGGATATAGAAACGTGATGGAAAATTGTCGCGACAACATGATCGTGCTCAAAGAAGGGTTAGAAAAAACTGGGCGATTCAACATAGTCTCGAAGGACGAAGGAGTCCCTCTCGTTGCCTTCTCCTTGAAAGACAATCTCCGACACAATGAGTTCGAGGTTTCCGAGATGTTGAGGCGCTTCGGATGGATCGTTCCAGCCTACACAATGCCTCCAGATGCAGAACACATCACTGTCCTTCGAGTCGTCATTCGAGAAGACTTCTCGCGCACACTGGCAGAGCGGCTCGTGTTTGACATCGAGAAAGTGTTGCACGAGCTCGACACTCTACCGGCTAGGGTTACCGCCAAGTTAGCGATTGCCCAGGAAGAGCCGACCCAATGCAATGGCTATGGCAATGGCACTGTAGTGGCAAAGAAAAGTGCTCTTGAGGTGCAGAGGGAGATCACTGCAACTTGGAAGAAGTTTGTTCTTGAGAGTAAGAAGACCAATGGCATTAAGACCAATGGCATTTGCTAG 1530 50.2 MVLSKTASESDVSIHSTFASRYVRASLPRFKMPELSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLGESEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVKKNSQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLEQVKSINVSGHKYGLVYAGIGWVIWRSKQDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRDNMIVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNLRHNEFEVSEMLRRFGWIVPAYTMPPDAEHITVLRVVIREDFSRTLAERLVFDIEKVLHELDTLPARVTAKLAIAQEEPTQCNGYGNGTVVAKKSALEVQREITATWKKFVLESKKTNGIKTNGIC 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2905253 2908312 - Bda010010.1 Bda12g00270 17285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00270 509 Pfam Pyridoxal-dependent decarboxylase conserved domain 34 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bda12g00270 509 Gene3D - 66 360 IPR015421 GO:0003824
Bda12g00270 509 CDD DOPA_deC_like 59 439 - -
Bda12g00270 509 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Bda12g00270 509 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bda12g00270 509 PANTHER GLUTAMATE DECARBOXYLASE 1 503 - -
Bda12g00270 509 Gene3D - 1 65 - -
Bda12g00270 509 Gene3D - 361 448 - -
Bda12g00270 509 PANTHER GLUTAMATE DECARBOXYLASE 1 503 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01124 Bda-Chr1:46132233 Bda12g00270 Bda-Chr12:2905253 0 dispersed
Bda06g00854 Bda-Chr6:11778423 Bda12g00270 Bda-Chr12:2905253 0 dispersed
Bda08g00204 Bda-Chr8:1847578 Bda12g00270 Bda-Chr12:2905253 4.99E-14 dispersed
Bda12g00270 Bda-Chr12:2905253 Bda12g00324 Bda-Chr12:3571338 0 dispersed
Bda12g00269 Bda-Chr12:2872967 Bda12g00270 Bda-Chr12:2905253 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00270 K01580 - csv:101216119 900.968