Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00280 ATGAAGCTTTCCACATCCGGTTTGGGACAGCAGGATCACGAAGGAGGAGAAAAGAAGTGCTTAAATTCAGAGCTTTGGCATGCGTGCGCAGGGCCCCTAGTGTCTCTCCCGACAGCTGGAACTCGCGTCGTCTACTTTCCTCAGGGTCACAGTGAGCAGGTTGCTGCCACGACCAACAAAGAAGCTGATGGGCAGATACCCAATTATCCAAACTTGCCGCCCCAGCTGATATGTCAACTCCATAATATTACTATGCATGCAGATGTGGAAACTGATGAAGTATATGCGCAAATGACATTACAGCCATTGTCACCCCAAGAACAAAAGGATACATTTCTTCCTATGGAGTTGGGGATCCCAAGCAAACAGCCCACTAACTATTTTTGCAAGACATTGACTGCAAGTGACACAAGCACTCACGGAGGTTTCTCTGTTCCTCGGCGTGCTGCTGAAAAAGTTTTTCCTCCTCTGGATTTTTCACAACAGCCACCAGCACAAGAACTTATTGCAAGAGACTTGCATGATATTGAGTGGAAGTTCAAGCATATTTTTCGAGGACAGCCAAAGCGTCATCTCCTGACAACAGGATGGAGTGTGTTTGTTAGTGCAAAAAGACTTGTCGCAGGAGATTCAGTTCTTTTCATATGGAATGAAAAAAATCAGCTTTTCTTGGGCATTCGTTGTGCTGCACGATCTCAAACTGTGATACCATCGTCTGTTCTATCAAGTGACAGTATGCATATTGGACTTCTTGCAGCTGCAGCTCATGCTGCTTCAACAAATAGTTGTTTCACAGTTTTTTATAACCCCAGGGCTAGCCCCTCTGAATTTGTCATCCCTCTTGCAAAATATGTTAAAGCTGTATTTCATACACGCATTTCGGTGGGGTTGCGTTTTCGAATGCTTTTTGAGACAGAAGAGTCAAGTGTTCGAAGGTACATGGGTACAATTACAGGAATAAGTGATCTGGATCCTGTTCGTTGGCCTAATTCACATTGGCGTTCTGTCAAGGTTGGTTGGGATGAATCAACTGCTGGTGACAGGCAACCAAGAGTATCTTTGTGGGAAATTGAGCCATTGACAACGTTTCCCATGTACCCTTCTCTTTTTCCAATCAGACTAAAACGTCCATGGCATCCTGGGGCCTCGTCATTGCATGATAGCAGAGATGATGCGGCTAACGGGTTAATGTGGCTAAGAGGGGAAACAGGGGAACAAGGTCTACAATCTCTCAATTTTCAATCTGTTGGTACGGTTCCCTGGTTGCAACAGAGACTTGATTCATCATTGCTTGGATCAGATCATAATCAACAGTACCAGACCATGGTGGCAGCTGGTATACAGAACCTTGGAAATGGAGATCTTCTAAGACAGCAAATGATGCACCTTCAACCACCTTTCCAATATCTTCAGCAGCCTAGCAGTCGGCCTTCGCCTCTGCAAATGACACAGCAGTCCCAACAGCAGATAGTTCAACAATCCTTGCATCCGAATGTCCTTCAGCCTCAATCCGAACCATTGGCAGAGAACTTACCCCAGCACATCTTGCAGCAAACAATTAATAATCAATCCGAGCAGCAGCGAAATCAGCAATCACTCTCTTATCATCGTGCTCTTCAGGCTCAAAGCACCCAGCTTCATCAAGATCACCAACCAAATCAGACTTCGCCCACCTTTCGTGGAACAGATTTTATGGATTCAAGCGCCAAGTTCTCTGCTTCAATGTACCCTAGGCAAAACATACTTGGTTCATCGACCCCTGATACTGGTGGCAGTTTCTCACACTTCTATCGAGGTCAGTCGGCGCTATCAGAGCACTCATCCCATCAAACCACTTCTAAATATGGTCATTCTCACGGCACTGCTCATACTAATTTTCCTTTGTTTCCTGGGAGAGACTCTATCGGGGAGCTGGGAAATTGTAACTCAGAGACTCCCAATCCCATTGTTTTTGGTGTGAATATTGATTCCCCTGGGCTTCTACTTCCCACTGTGCCAAATTTTGCCTCTCCTTCTATTGATGCTGATTCATCCACCATGCCAATATGGGATTCTGGATTTCAAAATTCTCTATATGGTTGTGTTCAGGACGCATCTGAGCAAGTTGATCCAACAACTCCCACTCGAACATTTGTTAAGGTTTACAAGTCGGGATCGGTTGGGCGCTCGCTTGACATCTCCCGGGTTAACAGCTACCATGAGTTGCGGGAGGAGTTGGCTCAGATGTTTGGCATTGAGGGAAAGTTGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTCGGAGATGACCCATGGGAGGCATTTGTCAACAACGTTTGGTACATCAAAATTCTTTCACCCGAAGATTTTCAAAAAATGGGGGAGCATGCGATTGAATCATTCGGCCCAAGTATAGGTTAG 2433 45.7 MKLSTSGLGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEADGQIPNYPNLPPQLICQLHNITMHADVETDEVYAQMTLQPLSPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDIEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRCAARSQTVIPSSVLSSDSMHIGLLAAAAHAASTNSCFTVFYNPRASPSEFVIPLAKYVKAVFHTRISVGLRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPIRLKRPWHPGASSLHDSRDDAANGLMWLRGETGEQGLQSLNFQSVGTVPWLQQRLDSSLLGSDHNQQYQTMVAAGIQNLGNGDLLRQQMMHLQPPFQYLQQPSSRPSPLQMTQQSQQQIVQQSLHPNVLQPQSEPLAENLPQHILQQTINNQSEQQRNQQSLSYHRALQAQSTQLHQDHQPNQTSPTFRGTDFMDSSAKFSASMYPRQNILGSSTPDTGGSFSHFYRGQSALSEHSSHQTTSKYGHSHGTAHTNFPLFPGRDSIGELGNCNSETPNPIVFGVNIDSPGLLLPTVPNFASPSIDADSSTMPIWDSGFQNSLYGCVQDASEQVDPTTPTRTFVKVYKSGSVGRSLDISRVNSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPEDFQKMGEHAIESFGPSIG 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3024876 3037037 + Bda010019.2 Bda12g00280 17295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00280 810 MobiDBLite consensus disorder prediction 471 490 - -
Bda12g00280 810 MobiDBLite consensus disorder prediction 522 565 - -
Bda12g00280 810 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 808 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda12g00280 810 SUPERFAMILY CAD & PB1 domains 704 783 - -
Bda12g00280 810 Gene3D - 126 228 IPR015300 -
Bda12g00280 810 SMART B3_2 128 230 IPR003340 GO:0003677
Bda12g00280 810 Gene3D - 292 364 - -
Bda12g00280 810 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Bda12g00280 810 Pfam AUX/IAA family 706 792 IPR033389 -
Bda12g00280 810 Pfam B3 DNA binding domain 128 227 IPR003340 GO:0003677
Bda12g00280 810 CDD B3_DNA 127 223 IPR003340 GO:0003677
Bda12g00280 810 Gene3D - 705 798 - -
Bda12g00280 810 ProSiteProfiles PB1 domain profile. 709 793 IPR000270 GO:0005515
Bda12g00280 810 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Bda12g00280 810 PANTHER AUXIN RESPONSE FACTOR 8 1 808 - -
Bda12g00280 810 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00281 Bda-Chr3:2465183 Bda12g00280 Bda-Chr12:3024876 8.67E-28 dispersed
Bda06g00159 Bda-Chr6:2298415 Bda12g00280 Bda-Chr12:3024876 1.60E-15 dispersed
Bda09g00878 Bda-Chr9:22884781 Bda12g00280 Bda-Chr12:3024876 0 dispersed
Bda11g00093 Bda-Chr11:1081549 Bda12g00280 Bda-Chr12:3024876 1.64E-29 dispersed
Bda11g01574 Bda-Chr11:48941667 Bda12g00280 Bda-Chr12:3024876 8.59E-15 dispersed
Bda12g00280 Bda-Chr12:3024876 Bda02g00770 Bda-Chr2:48437939 4.79E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16766 PF02309 AUX_IAA 1.00E-07 CL0072 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00280 - - csv:101208098 1285.78