Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00306 ATGGAGCGCGATGCTGGAATTCCTTCGGCCAGAGTGGCAGTGACGGAGGGGCAGTCCTCGGCTCTGTCGCCGTCGTTGAGCGAAGATGAACTGTGGCAAATGAACTTGAGATCAAGCGAAACAATGGAAGGAGGGCCATATCCTGAGCGTCAAGGAGAGCCAGATTGTTCTTATTACATCAGAACCGGCATATGTAGATTCGGAGCAACATGCCGTTTTAATCATCCTCCCGACAGAAAGCTGGCTATTGCCACTGCAAGGATGAAGGGGGAATATCCTGAGAGAATCGGACAGCCGGAATGTCAGTTATGCAAACAGTACTACCTGAAGACTGGAACCTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGATATCCGCTTCGCCCGAACGAGATTGAATGTGCTTATTATTTAAGAACTGGGATGTGCAAATTCGCAAGTACGTGTAAATTCCATCACCCTCAACCGTCTAATATGATGGTTCCCTTACGCGATTCTCCTGTTTATCCGACCGGCCAGTCTCCAACTACTAGTCAACAATCGTATCAAGGAGATATTACAAATTGGTCAAGAGCGTCTTTTATTCCAAGTCCAAGATGGCAAGGCCCCTCTAGTTATGCGCCTGTTATTCTACCGCAAGGACTAGTTTCCGTTCAAGGTTGGAATGCAAACAGTGGTCCTCTAGGATCAGTTTCTTCTTCAGAGAGTCAACAACAAACATCGACAATTAGTCAGGTTTACGGAGCTTCACGTCAAAACGAATCTGGTAGTACAGTCCATGAAGTACCGTTTTCTCTATTCCGTTCAGGCTCCGTCCCTGTTGGGTACTATGCATTGCAGAGGGACAATGTATTCCCCGAGCGACCTGGTGAGCCTGATTGTCAATTTTATATGAAAACTGGTGATTGTAAATTTGGCTTAGTCTGTCGATTCCACCATCCAAGAGAGAGACTACTACCGGCTCCGGACTGTGTTTTGAGCCCCATCGGCCTTCCCTTACGTCCGGGAGAACCTTTATGCCTCTTCTATTCTCGTTATGGTATCTGCAAGTTTGGTCCAAGCTGCAAATTCGACCACCCGATGAGAATCTTCTCATACAATTTTGTCGCATCACAGTCTTCGGATTTCTCAGTTCGTCATTTATTGGGTTCATCGTCGGGAACATCAGCCCTAAATTTGTCCCCCGAAGGACATATTGAAGCAGGTTCTACAAAGCCGAGGAGGCTCTCACTATCAGAAAGTAGACGGATGTCTTCTAGTGGCGACAATATTGACATAGCCGAATGA 1338 46.49 MERDAGIPSARVAVTEGQSSALSPSLSEDELWQMNLRSSETMEGGPYPERQGEPDCSYYIRTGICRFGATCRFNHPPDRKLAIATARMKGEYPERIGQPECQLCKQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPNEIECAYYLRTGMCKFASTCKFHHPQPSNMMVPLRDSPVYPTGQSPTTSQQSYQGDITNWSRASFIPSPRWQGPSSYAPVILPQGLVSVQGWNANSGPLGSVSSSESQQQTSTISQVYGASRQNESGSTVHEVPFSLFRSGSVPVGYYALQRDNVFPERPGEPDCQFYMKTGDCKFGLVCRFHHPRERLLPAPDCVLSPIGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMRIFSYNFVASQSSDFSVRHLLGSSSGTSALNLSPEGHIEAGSTKPRRLSLSESRRMSSSGDNIDIAE 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3373031 3376278 - Bda010047.1 Bda12g00306 17321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00306 445 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Bda12g00306 445 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 13 442 - -
Bda12g00306 445 ProSiteProfiles Zinc finger C3H1-type profile. 103 127 IPR000571 GO:0046872
Bda12g00306 445 SUPERFAMILY CCCH zinc finger 102 128 IPR036855 GO:0046872
Bda12g00306 445 Gene3D - 303 388 - -
Bda12g00306 445 Gene3D - 47 100 - -
Bda12g00306 445 Gene3D - 101 180 - -
Bda12g00306 445 SMART c3hfinal6 98 126 IPR000571 GO:0046872
Bda12g00306 445 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Bda12g00306 445 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Bda12g00306 445 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Bda12g00306 445 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Bda12g00306 445 PANTHER PROTEIN PHOSPHATASE RELATED 13 442 - -
Bda12g00306 445 MobiDBLite consensus disorder prediction 1 26 - -
Bda12g00306 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 332 IPR000571 GO:0046872
Bda12g00306 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 126 IPR000571 GO:0046872
Bda12g00306 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 378 IPR000571 GO:0046872
Bda12g00306 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 77 IPR000571 GO:0046872
Bda12g00306 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 172 IPR000571 GO:0046872
Bda12g00306 445 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Bda12g00306 445 SUPERFAMILY CCCH zinc finger 354 378 IPR036855 GO:0046872
Bda12g00306 445 SUPERFAMILY CCCH zinc finger 148 173 IPR036855 GO:0046872
Bda12g00306 445 SUPERFAMILY CCCH zinc finger 310 335 IPR036855 GO:0046872
Bda12g00306 445 SUPERFAMILY CCCH zinc finger 55 78 IPR036855 GO:0046872
Bda12g00306 445 MobiDBLite consensus disorder prediction 410 445 - -
Bda12g00306 445 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Bda12g00306 445 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00280 Bda-Chr8:2916395 Bda12g00306 Bda-Chr12:3373031 4.89E-99 dispersed
Bda12g00047 Bda-Chr12:290653 Bda12g00306 Bda-Chr12:3373031 5.09E-115 dispersed
Bda12g00306 Bda-Chr12:3373031 Bda15g00866 Bda-Chr15:13877010 5.03E-83 dispersed
Bda12g00306 Bda-Chr12:3373031 Bda07g01144 Bda-Chr7:13579028 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16767 PF00642 zf-CCCH 1.70E-09 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00306 - - qsu:112012560 697.582