Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00309 ATGGGGTCCTGCCTTTCGATCGAAAGCAGGAGCCCTATTCCTGGATCACCAAGTTCTCCCGTAATGGGAGCTAAGAAGAGAAAAACGTCGAAAAAACGATTAGGATCACGTAATTCTTCGTTTGACAATCGAAGGGAAGATCCTCTGCATCGAATTCCAGGGAGGATGTTCCTGAATGGATCTAGTGAAGTTGCTTCTTTGTTCACTCAACAGGGTAGGAAAGGGACCAACCAAGATGCCATGATTGTTTGGGAGAATTTCGGTTCAAGAAGTGACACGATCTTCTGTGGGGTGTTTGATGGGCACGGACCGTATGGCCATATGGTTGCAAGGAGAGTGAGGGACTCTCTTCCCCTGAAAGTGAAAGCCCAGTGGGAATTCAATTCAGTGTCTGAAGAAGTTCTCCCAGAACTCAGTCCTAATGCTAATGGAGGAACAATCCTGGATGACGGCGAAGGAGTAGCTGGAGCCGCCATTGATGGCACCCTATTGGAGAAGCCTGTCGAAACTTTTCGTACATTGAAGGAATCGTTTTTAAAGGCTTCTAAAATTATGGACAGAGAATTGAGGATGCACCCGAATATTGATTGTTTCTGTAGTGGGACTACGGCCGTGACTTTGGTCAAGCAGGAGGGAAATCTTCTTATTGGAAATGTTGGAGATTCCAGAGCTGTAATGGCTACCAGAGATGAAGATGACTCCCTTGTTGCAGTTCAGTTGACTGTTGATCTGAAACCAAATCTTCCTGGCGAAGAAGAGAGAATCCGCAGCTGTAAAGGTCGGGTCTTTGCTCTTCAAGACGAACCAGAGGTTGCTCGTGTATGGCTTCCGAACAGTGACTCCCCAGGCCTGGCTATGGCAAGAGCTTTTGGAGATTTTTGTCTCAAGGATTTCGGTCTAATATCTGTTCCCGAAATAACTTGTCATCAAATAACCGACAAGGATGAATTCGTCGTCATGGCTACCGATGGGATATGGGACGTTTTATCGAACTCAGAAGTAGTAGAGATTGTAGCATCAGCCCCATCACGATCGACTGCAGCTCGAGCTCTCGTAGAGACAGCAGTTCGAGCTTGGCGGTGTAAATATCCCACTTCCAAAGTCGATGATTGTGCCGTAGTTTGCCTCTTCCTCGATTCAAACTCGAACTCAAACTCAAATTCGAACGTCCTATCATCGGCCTCTAATGACAAATCCAAAAACCATCTCTCCTCTGAAGTAGGAGTTTGCAATGGCGGAGCTGCCATTAGCGGGGACCTCTCCCGACATAGTGATCTGAACCGGTCGGGAACGATACGGACTGTCAAAGACATTTTAGGCGAAGAAGAAGATGAAGACAATTTGGCAGAAACAGGGACTGAGTGGTTGGCTCTAGAAGGAGTGTCGAGAGTAAACACGTTATTAACTCTGCCGAGATATGTTCCAACTAAGAAGGAGAATGCTCGGTGA 1449 46.79 MGSCLSIESRSPIPGSPSSPVMGAKKRKTSKKRLGSRNSSFDNRREDPLHRIPGRMFLNGSSEVASLFTQQGRKGTNQDAMIVWENFGSRSDTIFCGVFDGHGPYGHMVARRVRDSLPLKVKAQWEFNSVSEEVLPELSPNANGGTILDDGEGVAGAAIDGTLLEKPVETFRTLKESFLKASKIMDRELRMHPNIDCFCSGTTAVTLVKQEGNLLIGNVGDSRAVMATRDEDDSLVAVQLTVDLKPNLPGEEERIRSCKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPEITCHQITDKDEFVVMATDGIWDVLSNSEVVEIVASAPSRSTAARALVETAVRAWRCKYPTSKVDDCAVVCLFLDSNSNSNSNSNVLSSASNDKSKNHLSSEVGVCNGGAAISGDLSRHSDLNRSGTIRTVKDILGEEEDEDNLAETGTEWLALEGVSRVNTLLTLPRYVPTKKENAR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3395056 3397888 + Bda010050.1 Bda12g00309 17324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00309 482 Gene3D - 60 380 IPR036457 -
Bda12g00309 482 PANTHER ALPHABET, ISOFORM E-RELATED 1 467 - -
Bda12g00309 482 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 467 - -
Bda12g00309 482 MobiDBLite consensus disorder prediction 1 16 - -
Bda12g00309 482 CDD PP2Cc 64 378 IPR001932 -
Bda12g00309 482 ProSiteProfiles PPM-type phosphatase domain profile. 64 378 IPR001932 -
Bda12g00309 482 SUPERFAMILY PP2C-like 61 380 IPR036457 -
Bda12g00309 482 Pfam Protein phosphatase 2C 70 357 IPR001932 -
Bda12g00309 482 MobiDBLite consensus disorder prediction 1 55 - -
Bda12g00309 482 SMART PP2C_4 53 376 IPR001932 -
Bda12g00309 482 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00320 Bda-Chr6:5253823 Bda12g00309 Bda-Chr12:3395056 1.97E-149 dispersed
Bda07g01283 Bda-Chr7:15674694 Bda12g00309 Bda-Chr12:3395056 7.75E-111 dispersed
Bda12g00309 Bda-Chr12:3395056 Bda13g01843 Bda-Chr13:42548903 0 dispersed
Bda01g01090 Bda-Chr1:45656495 Bda12g00309 Bda-Chr12:3395056 0 wgd
Bda12g00309 Bda-Chr12:3395056 Bda07g01141 Bda-Chr7:13531687 9.28E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00309 - - cit:102625738 645.58