Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00322 ATGTCACTCTTTCTTCGTCTTCACTTCCTCTTCACGCTTACTGCAACCATCGCATCAATGGCGGAATCCCATTACTCCTCGTTTCCTCAGGAGGATTCTTCTCCTTCATCCTCGCTCTCCGACTGGAGATCCGCCCGTGCCACTTACTATGCCGCCTCCGACCCTCGTGACGCTGTCGGCGGTGCCTGCGGCTACGGCGACCTAGTGAAGGCCGGGTACGGTATGGCCACGGTGGGTCTGAGTGAGACGCTGTTTGAGCGCGGTCAGATCTGCGGCGCTTGCTTCCAGCTGAGGTGTGTTGAGGATCTCCGGTGGTGTATTCCCGGAACTTCGATCATCGTCACAGCGACAAACTTTTGTGCCCCTAATTACGGGTTCACGGCGGAGGGAGGTGGCCATTGTAACCCACCCAATAATCATTTTGTGCTTCCCATTGAGGCGTTCGAGAAGATTGCTATCTGGAAAGCCGGGAATATGCCTGTTCAATATCGCAGAATCAAGTGCAGAAAGGAAGGTGGGATTCGATTTTCGATAGATGGGGCAGGCATCTTCATTTCTGTGCTGATAAGCAACGTCGGTGGGGCTGGGGATGTACTGGCGGTGAAGATCAAAGGGTCAAGAACCGGTTGGCTTCCGATGGGACGAAATTGGGGACAAAACTGGCATATTAATGCCGATTTGAAGAACCAACCTCTGTCCTTTGAGGTAACAAACAGTGATGGAATTACTCTAACATCTTACAACGTTGCTCCCAAGGATTGGAACTTTGGACAAACCTTTGAAGGCAAACAATTCGACTCTTGA 804 51.62 MSLFLRLHFLFTLTATIASMAESHYSSFPQEDSSPSSSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSETLFERGQICGACFQLRCVEDLRWCIPGTSIIVTATNFCAPNYGFTAEGGGHCNPPNNHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFSIDGAGIFISVLISNVGGAGDVLAVKIKGSRTGWLPMGRNWGQNWHINADLKNQPLSFEVTNSDGITLTSYNVAPKDWNFGQTFEGKQFDS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3555801 3557710 - Bda010061.2 Bda12g00322 17337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00322 267 Pfam Expansin C-terminal domain 174 251 IPR007117 -
Bda12g00322 267 Gene3D - 174 265 IPR036749 -
Bda12g00322 267 SUPERFAMILY Barwin-like endoglucanases 41 191 IPR036908 -
Bda12g00322 267 SUPERFAMILY PHL pollen allergen 170 262 IPR036749 -
Bda12g00322 267 Gene3D - 26 169 IPR036908 -
Bda12g00322 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 262 IPR007117 -
Bda12g00322 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 173 IPR007112 -
Bda12g00322 267 Pfam Lytic transglycolase 78 163 IPR009009 -
Bda12g00322 267 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Bda12g00322 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Bda12g00322 267 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Bda12g00322 267 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Bda12g00322 267 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Bda12g00322 267 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Bda12g00322 267 SMART dpbb_1 77 163 IPR007112 -
Bda12g00322 267 PANTHER EXPANSIN-A15 23 266 IPR002963 GO:0009664
Bda12g00322 267 PANTHER EXPANSIN-A13 23 266 - -
Bda12g00322 267 PRINTS Expansin signature 131 148 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 72 86 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 112 122 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 248 264 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 172 184 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 99 110 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 219 240 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 148 161 IPR002963 GO:0009664
Bda12g00322 267 PRINTS Expansin signature 184 205 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00450 Bda-Chr6:6546181 Bda12g00322 Bda-Chr12:3555801 4.98E-94 dispersed
Bda12g00322 Bda-Chr12:3555801 Bda15g00228 Bda-Chr15:4971370 2.36E-90 dispersed
Bda12g00322 Bda-Chr12:3555801 Bda11g01211 Bda-Chr11:12476870 1.54E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00322 - - csv:101206236 474.937