Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00337 ATGAGGATTATGATCAAAGGTGGTGTTTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGAATCTCCTCCCTTCTCGTTCGTAAATCGGCCAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGACCCCTCCATTAAGAAGACTGAGTGGACGAGAGAGGAAGATGAGAAGCTACTTCATCTTGCAAAGCTCATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGGCGGACTCCATCTCAGTGTCTTGAGCGGTATGAAAAACTCCTTGATGCCGCATGCATCAAGGATGAGAACTATGAAGCTGGTGATGACCCACGTAAGTTACGTCCAGGGGAGATAGACCCAAACCCTGAGTCCAAGCCTGCACGTCCTGATCCAGTTGACATGGATGAAGATGAAAAGGAAATGCTGTCTGAAGCACGAGCCAGGCTAGCGAACACCAGAGGTAAAAAGGCAAAGAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCTAGGCGACTTGCTTCCTTACAAAAAAGAAGAGAATTAAAGGCAGCTGGGATTAATAATAGACATCGGAAAAGGAAAAGGAGGGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAAGCCTCCTCCAGGGTTTTTTGATGTCAGTGAGGAAGATAGGCCTGTGGAGCAACCTAAATTCCCAACCACAATTGAAGAACTGGAAGGGAAAAGAAGAGTTGATGTGGAAGCACAATTAAGAAAGCAAGATGTTGCAAAGGATAAAATTGCACAAAGACTGGATGCTCCGACAGCTATATTGCAAGCGAAAAAATTAAATGATCCTGAAACAGTGAGGAAAAGATCAAAACTAATGCTTCCTGCACCTCAAATTTCGGATCATGAATTAGAGGAAATTGCAAAGATGGGTTATGCTAGTGATCTTCTTACTGGAAGTGAGGAACTCACAGAAGGTAGTGGAGCAACACGTGCTCTTCTTGCAAATTATGCGCAAACGCCACAACAAGGAATGACACCTTTTCGAACTCCACAAAGAACTCCCGCTGGTAAGGGAGATTCAATAATGATGGAAGCAGAAAATCTGGCTAGGTTGAGAGAGTCGCAAACACCATTATTAGGAGGAGAGAATCCAGAGTTGCATCCTTCAGATTTTTCAGGGGTCACTCCCAAGCAAAAAGAAATACAGACGCCAAATCCTATGTTGACTCCCATGGCAACTTCTGGAGGCCCTGGTCTTACTCCAAAAAGTGGTATGACACCATCTAGGGATGGTTATAACTTTGGAATGACTCCAAAGGGCACTCCAATTAGGGATGATCTACATATCAATGAAGACATGGATATTCATGATAATGCTAAACTTGAGCTAAGGAGACGAGCTGATTTGAGGAGGAATTTACGTTTAGGTTTGAGCGATCTTCCACAGCCCAAGAATGAGTATCAAATAGTCATGCAACCAGTTCCAGAAGATAATGAGGAACCAGAGGAGAAAATAGAGAAGGATATGTCGGATAGGATTGCTAGAGAGAGAGCTGAGGAAGAAGCGAGACAGCAAGCATTACTTAGGAAGAGATCTAAAGTACTTCAGCGTGAGCTTCCCAGACCTCCTGTTGCTTCATTGGAACTGATTAGGAATTCTTTAATGAGAGCTGATGGAGATAAGAGCTCGTTTGTTCCTCCTACATCTATGGAGCAGGCTGATGAAATGATTAGGAAGGAGATTGTATCGCTACTGGAGCATGACAATGCAAAGTATCCTCTTGACGATAAAGTGAACAAGGAAAAGGGGAAAAATGTTAAACGTTCCACACATGGACCCCTTGATGCCATTCTTGTTATTGAAGAATTTGAAGAAGATGAGCTAAATGAGGCTGTTTTTTTTATAAACGAAGAAGTTCAGTATCTTCGAGTAGCAATGGCACATGAGAATGAATCCCTTGAAGAATTTGTTGAAGCACATAAAACTTGCCAGAATGATCTCATGTATTTCCCCACCCGAAATGCTTATGGTCTTTCAAGTGTCGCTGGCAATATGGAGAGGCTTGCAGCATTGCAAAATGAATTTGAGAATGTTAAAAAGAAAATGGATGACGATACTGAAAAGGCTGTACGTATGGAGAAGAAGGTCAAAGTTCTTACACATGGTTATGAGACAAGGGCCAAATCAAGCCTATGGCCTCAAATTGAAGCTACCTTCAAGCAGATGGAAACTGCTGCAACAGAGCTCGAGTGTTTTCAAGCTTTGCACAAGGAAGAGCTATTAGCTGCATCACACAGGATTAATACGCTCCGGGAAGAAGTTCAAAAGCAAAAGGAACTTGAGCAAACCTTGCAGAGGAAATATGGAGATCGGGTAATGGAGTTGGAAAGAACTCAACGCCTTATGGATCACTACAGAACTCAAGCAAAACAGCAAGAAGAAATTGCAGCTGAAAATGATGACCTTACTGAAGCTACTGCTTTTGAGACAGTGGATTTATTAGTTGATGAAAATGCTTTTCGACTAACTGGTACTATTGATGTTGCCTCAGAGAAAGAGCCATCGACAGTGGGTATGGATGTTGAATTGCCCGACAATATATCTTCTGCTTGTGAAGTGGAACCCACGAGAGTAGAACAAGAGGACCATAATGAAAATGGGATTTCGACAAAGGAACACTTTGATAGTGCCGAAAAAATTTCTGAACCAGTCGTGGGTATTGAAGACACGATCGTGCAAGCGTCAAAGGACAATATTTCGACTTCGAAGGTTGAAAACAAGGATGAGCTCATTGAGCAGCATGAGCATAACCTCGACAGCGAGAACTCGAACATTGAATTGATGAAACATGATGAACCCGTGCCTAGTTTGGCTGATAATGATGGATTTAGTTCCAAGCATGACGACTAG 2922 42.74 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACIKDENYEAGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINNRHRKRKRRGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDVAKDKIAQRLDAPTAILQAKKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLTGSEELTEGSGATRALLANYAQTPQQGMTPFRTPQRTPAGKGDSIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKQKEIQTPNPMLTPMATSGGPGLTPKSGMTPSRDGYNFGMTPKGTPIRDDLHINEDMDIHDNAKLELRRRADLRRNLRLGLSDLPQPKNEYQIVMQPVPEDNEEPEEKIEKDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLMRADGDKSSFVPPTSMEQADEMIRKEIVSLLEHDNAKYPLDDKVNKEKGKNVKRSTHGPLDAILVIEEFEEDELNEAVFFINEEVQYLRVAMAHENESLEEFVEAHKTCQNDLMYFPTRNAYGLSSVAGNMERLAALQNEFENVKKKMDDDTEKAVRMEKKVKVLTHGYETRAKSSLWPQIEATFKQMETAATELECFQALHKEELLAASHRINTLREEVQKQKELEQTLQRKYGDRVMELERTQRLMDHYRTQAKQQEEIAAENDDLTEATAFETVDLLVDENAFRLTGTIDVASEKEPSTVGMDVELPDNISSACEVEPTRVEQEDHNENGISTKEHFDSAEKISEPVVGIEDTIVQASKDNISTSKVENKDELIEQHEHNLDSENSNIELMKHDEPVPSLADNDGFSSKHDD 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3844894 3848850 + Bda010077.1 Bda12g00337 17352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00337 973 CDD SANT_CDC5_II 55 106 - -
Bda12g00337 973 Gene3D - 5 58 - -
Bda12g00337 973 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Bda12g00337 973 SUPERFAMILY Homeodomain-like 33 105 IPR009057 -
Bda12g00337 973 Coils Coil 764 791 - -
Bda12g00337 973 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bda12g00337 973 MobiDBLite consensus disorder prediction 114 149 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 399 414 - -
Bda12g00337 973 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 894 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 212 234 - -
Bda12g00337 973 Coils Coil 167 187 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 381 414 - -
Bda12g00337 973 SMART sant 58 105 IPR001005 -
Bda12g00337 973 SMART sant 6 55 IPR001005 -
Bda12g00337 973 Coils Coil 799 819 - -
Bda12g00337 973 Coils Coil 685 719 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 938 973 - -
Bda12g00337 973 Gene3D - 59 116 - -
Bda12g00337 973 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bda12g00337 973 PANTHER - 1 894 - -
Bda12g00337 973 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Bda12g00337 973 CDD SANT 10 53 IPR001005 -
Bda12g00337 973 Pfam Myb-like DNA-binding domain 10 70 - -
Bda12g00337 973 Coils Coil 928 955 - -
Bda12g00337 973 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00337 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 1385.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00337 Bda-Chr12:3844894 Bda03g01467 Bda-Chr3:52603883 5.47E-11 dispersed
Bda12g00337 Bda-Chr12:3844894 Bda07g01179 Bda-Chr7:14031398 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00337 . 1 829 MYB-Related Transcription Factor Family AT1G09770 74.9 0.0e+00 1175.2
Bda07g01179 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.5 0.0e+00 1150.2
Bda15g00506 . 183 661 MYB-Related Transcription Factor Family AT3G18100 55.2 2.4e-149 526.2
Bda15g00506 . 183 661 MYB-Related Transcription Factor Family AT3G18100 55.2 2.4e-149 526.2
Bda12g00337 . 1 829 MYB-Related Transcription Factor Family AT1G09770 74.9 0.0e+00 1175.2
Bda07g01179 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.5 0.0e+00 1150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16768 PF11831 Myb_Cef 3.00E-58 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00337 Bda_Chr12 FPKM 12.445298 14.360898 13.071681 14.203733 15.669204 14.963297 13.093808 16.532238 21.701464