Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00337 ATGAGGATTATGATCAAAGGTGGTGTTTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGAATCTCCTCCCTTCTCGTTCGTAAATCGGCCAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGACCCCTCCATTAAGAAGACTGAGTGGACGAGAGAGGAAGATGAGAAGCTACTTCATCTTGCAAAGCTCATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGGCGGACTCCATCTCAGTGTCTTGAGCGGTATGAAAAACTCCTTGATGCCGCATGCATCAAGGATGAGAACTATGAAGCTGGTGATGACCCACGTAAGTTACGTCCAGGGGAGATAGACCCAAACCCTGAGTCCAAGCCTGCACGTCCTGATCCAGTTGACATGGATGAAGATGAAAAGGAAATGCTGTCTGAAGCACGAGCCAGGCTAGCGAACACCAGAGGTAAAAAGGCAAAGAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCTAGGCGACTTGCTTCCTTACAAAAAAGAAGAGAATTAAAGGCAGCTGGGATTAATAATAGACATCGGAAAAGGAAAAGGAGGGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAAGCCTCCTCCAGGGTTTTTTGATGTCAGTGAGGAAGATAGGCCTGTGGAGCAACCTAAATTCCCAACCACAATTGAAGAACTGGAAGGGAAAAGAAGAGTTGATGTGGAAGCACAATTAAGAAAGCAAGATGTTGCAAAGGATAAAATTGCACAAAGACTGGATGCTCCGACAGCTATATTGCAAGCGAAAAAATTAAATGATCCTGAAACAGTGAGGAAAAGATCAAAACTAATGCTTCCTGCACCTCAAATTTCGGATCATGAATTAGAGGAAATTGCAAAGATGGGTTATGCTAGTGATCTTCTTACTGGAAGTGAGGAACTCACAGAAGGTAGTGGAGCAACACGTGCTCTTCTTGCAAATTATGCGCAAACGCCACAACAAGGAATGACACCTTTTCGAACTCCACAAAGAACTCCCGCTGGTAAGGGAGATTCAATAATGATGGAAGCAGAAAATCTGGCTAGGTTGAGAGAGTCGCAAACACCATTATTAGGAGGAGAGAATCCAGAGTTGCATCCTTCAGATTTTTCAGGGGTCACTCCCAAGCAAAAAGAAATACAGACGCCAAATCCTATGTTGACTCCCATGGCAACTTCTGGAGGCCCTGGTCTTACTCCAAAAAGTGGTATGACACCATCTAGGGATGGTTATAACTTTGGAATGACTCCAAAGGGCACTCCAATTAGGGATGATCTACATATCAATGAAGACATGGATATTCATGATAATGCTAAACTTGAGCTAAGGAGACGAGCTGATTTGAGGAGGAATTTACGTTTAGGTTTGAGCGATCTTCCACAGCCCAAGAATGAGTATCAAATAGTCATGCAACCAGTTCCAGAAGATAATGAGGAACCAGAGGAGAAAATAGAGAAGGATATGTCGGATAGGATTGCTAGAGAGAGAGCTGAGGAAGAAGCGAGACAGCAAGCATTACTTAGGAAGAGATCTAAAGTACTTCAGCGTGAGCTTCCCAGACCTCCTGTTGCTTCATTGGAACTGATTAGGAATTCTTTAATGAGAGCTGATGGAGATAAGAGCTCGTTTGTTCCTCCTACATCTATGGAGCAGGCTGATGAAATGATTAGGAAGGAGATTGTATCGCTACTGGAGCATGACAATGCAAAGTATCCTCTTGACGATAAAGTGAACAAGGAAAAGGGGAAAAATGTTAAACGTTCCACACATGGACCCCTTGATGCCATTCTTGTTATTGAAGAATTTGAAGAAGATGAGCTAAATGAGGCTGTTTTTTTTATAAACGAAGAAGTTCAGTATCTTCGAGTAGCAATGGCACATGAGAATGAATCCCTTGAAGAATTTGTTGAAGCACATAAAACTTGCCAGAATGATCTCATGTATTTCCCCACCCGAAATGCTTATGGTCTTTCAAGTGTCGCTGGCAATATGGAGAGGCTTGCAGCATTGCAAAATGAATTTGAGAATGTTAAAAAGAAAATGGATGACGATACTGAAAAGGCTGTACGTATGGAGAAGAAGGTCAAAGTTCTTACACATGGTTATGAGACAAGGGCCAAATCAAGCCTATGGCCTCAAATTGAAGCTACCTTCAAGCAGATGGAAACTGCTGCAACAGAGCTCGAGTGTTTTCAAGCTTTGCACAAGGAAGAGCTATTAGCTGCATCACACAGGATTAATACGCTCCGGGAAGAAGTTCAAAAGCAAAAGGAACTTGAGCAAACCTTGCAGAGGAAATATGGAGATCGGGTAATGGAGTTGGAAAGAACTCAACGCCTTATGGATCACTACAGAACTCAAGCAAAACAGCAAGAAGAAATTGCAGCTGAAAATGATGACCTTACTGAAGCTACTGCTTTTGAGACAGTGGATTTATTAGTTGATGAAAATGCTTTTCGACTAACTGGTACTATTGATGTTGCCTCAGAGAAAGAGCCATCGACAGTGGGTATGGATGTTGAATTGCCCGACAATATATCTTCTGCTTGTGAAGTGGAACCCACGAGAGTAGAACAAGAGGACCATAATGAAAATGGGATTTCGACAAAGGAACACTTTGATAGTGCCGAAAAAATTTCTGAACCAGTCGTGGGTATTGAAGACACGATCGTGCAAGCGTCAAAGGACAATATTTCGACTTCGAAGGTTGAAAACAAGGATGAGCTCATTGAGCAGCATGAGCATAACCTCGACAGCGAGAACTCGAACATTGAATTGATGAAACATGATGAACCCGTGCCTAGTTTGGCTGATAATGATGGATTTAGTTCCAAGCATGACGACTAG 2922 42.74 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACIKDENYEAGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINNRHRKRKRRGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDVAKDKIAQRLDAPTAILQAKKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLTGSEELTEGSGATRALLANYAQTPQQGMTPFRTPQRTPAGKGDSIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKQKEIQTPNPMLTPMATSGGPGLTPKSGMTPSRDGYNFGMTPKGTPIRDDLHINEDMDIHDNAKLELRRRADLRRNLRLGLSDLPQPKNEYQIVMQPVPEDNEEPEEKIEKDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLMRADGDKSSFVPPTSMEQADEMIRKEIVSLLEHDNAKYPLDDKVNKEKGKNVKRSTHGPLDAILVIEEFEEDELNEAVFFINEEVQYLRVAMAHENESLEEFVEAHKTCQNDLMYFPTRNAYGLSSVAGNMERLAALQNEFENVKKKMDDDTEKAVRMEKKVKVLTHGYETRAKSSLWPQIEATFKQMETAATELECFQALHKEELLAASHRINTLREEVQKQKELEQTLQRKYGDRVMELERTQRLMDHYRTQAKQQEEIAAENDDLTEATAFETVDLLVDENAFRLTGTIDVASEKEPSTVGMDVELPDNISSACEVEPTRVEQEDHNENGISTKEHFDSAEKISEPVVGIEDTIVQASKDNISTSKVENKDELIEQHEHNLDSENSNIELMKHDEPVPSLADNDGFSSKHDD 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3844894 3848850 + Bda010077.1 Bda12g00337 17352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00337 973 CDD SANT_CDC5_II 55 106 - -
Bda12g00337 973 Gene3D - 5 58 - -
Bda12g00337 973 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Bda12g00337 973 SUPERFAMILY Homeodomain-like 33 105 IPR009057 -
Bda12g00337 973 Coils Coil 764 791 - -
Bda12g00337 973 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bda12g00337 973 MobiDBLite consensus disorder prediction 114 149 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 399 414 - -
Bda12g00337 973 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 894 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 212 234 - -
Bda12g00337 973 Coils Coil 167 187 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 381 414 - -
Bda12g00337 973 SMART sant 58 105 IPR001005 -
Bda12g00337 973 SMART sant 6 55 IPR001005 -
Bda12g00337 973 Coils Coil 799 819 - -
Bda12g00337 973 Coils Coil 685 719 - -
Bda12g00337 973 MobiDBLite consensus disorder prediction 938 973 - -
Bda12g00337 973 Gene3D - 59 116 - -
Bda12g00337 973 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bda12g00337 973 PANTHER - 1 894 - -
Bda12g00337 973 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Bda12g00337 973 CDD SANT 10 53 IPR001005 -
Bda12g00337 973 Pfam Myb-like DNA-binding domain 10 70 - -
Bda12g00337 973 Coils Coil 928 955 - -
Bda12g00337 973 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00337 Bda-Chr12:3844894 Bda03g01467 Bda-Chr3:52603883 5.47E-11 dispersed
Bda12g00337 Bda-Chr12:3844894 Bda07g01179 Bda-Chr7:14031398 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16768 PF11831 Myb_Cef 3.00E-58 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00337 K12860 - csv:101205030 1385.16