Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00339 ATGGGGACAAAACTTGTGCAAATTTGTGTCAAAGAAGAGAATGACGACTTTCCATCAGTTCCACCGGGTTTTGAGGCATTGACATCTTTTGCCGTCCAGAAGATAGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCTTGCCTTCCACTAGTATTTCAGAAACACAATCCATTCATATGGATATTAAAACGGAAAGCACTCTTGATACTAAGATAACAAGGTCCTTACGACCAAGACCATGTATTAACTATGGTCTATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGAGGGTTGAACAAAATTTATCTTTGAAGCCTCCTCTTCCCAAGGGTGTAATTCGGGGTTGTGCAGAGTGTAGTACTTGCCAAAAGGTTACTGCAAGATGGCATCCCAAAGAGTCTTGCAGACCCGATATTGAGGACGCGCCCGTTTTTTATCCAACTGAAGAGGACTTTGAAGATACCTTGAAATATATAGCTAGTATACGTGCAAAAGCTGAACCTTATGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTCTCCTTTACAGGAACTAGTGAAATGGACAAGTTCCAAATTTGCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCATTGAGAAAGATATCAAGGACTCATGGCCAAATGAAGAGAAAAAGAAGAAGACATGCACGCATGGGGGTAGATTGTGCTACGAGTAATGGAGGACTAGGAGACACTGAAAGCTTTGGATTTGAACCTGGTTTGGAGTTTACGTTGGAAACATTTAAAAAATATGCAGATGACTTCAAAATGCAGTATTTTAGTGGCACAGACGTTGATTCTTTAACTGGAATTCAATTGAAAGAGAGTCATGAGCCATCGGTGGAGAATATTGAGGGGGAATATTGGCGGATGGTAGAGAAACCTACCGAGGAAATTGAGGTGTTATATGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTGGCCAAGTTGGTTCAACTTCCGATGAAAAATATGTAACATCAGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTATGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCTTGGCTGTATGTTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGCGTCCCAGGGAAGGATGCCTGCAAATTAGAGGATGCTATGAGAAAGCATTTGCCTGATCTTTTTGAGGAACAGCCTGATTTACTTCATAAGCTGGTCACACAACTTTCCCCTTCCATATTAAAGACTGAGGGAGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATCGCCATAGAATTATACCGTAAGCAAGGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACTTCTGATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCAAAATCTCTCAAGATGCGGATTGAAATGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAACAGCTTTGATGCCACTAACGAGAAGGAATGCAGTTTATGCTTTTTTGACTTGCACCTCTCTGCAGTTAGTTGCCCTTGTTCCCCAGATAAATACGCATGCTTGAATCACGCGAAGCAGTTCTGCTCCTGTGCTCAGGCTGCTAGAATTTTCCTCTTCCGATATGAGATTAATGAATTGAGTATCCTTGTTGAGGCTTTGGAAGGGAAATTAAGCGCAATTTATAGATGGGCTAAACTGGACCTTGGATTGGCTCTAAGTTCTCACATCTCTAAAGACAAGATGCATAATAGTAGATTAATCAAATCATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCAAGTGGTTATCTTAAAGATTTACAGTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCCAGTGGAATCACTGGTGATTTCTCTTCTCAACGCAACAATGAATTAGCAGAAGCTATATCAACGTTGAAGATCAAAGAATTATTGTTGAAATCTAATTGTTTGTTAAAGGAAATTGAAAAGACGAATCATGACTTTCAATTGAGGAAAGAAGAACACAATGGTACTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCCGAAAGACGTAAAACATTGTGTAAATCCAGTTTCCAAAAAAGGAAGAGATGATAAGGCTTCAGTTTTGAAACCCAAGAATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGGATAAAGAAAAAGAAAGTTCTTTAGCGAGGCAATTAGAAGACTCTGACAGGTTGGCTGGAGCTGATACTAAGGCAATCCTTTGTTATCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTAATGGATGAGAAGGATATCGTTTATCAGCCTCAGAAGAAACTGAAAACTGGTTCAGCTCATGTTGTGCCAGTAAAATTGACCACCCTGAAAAAATAG 2763 40.03 MGTKLVQICVKEENDDFPSVPPGFEALTSFAVQKIEDNFQRGSDNLISCLPSTSISETQSIHMDIKTESTLDTKITRSLRPRPCINYGLYDSYCDGVFDSERVEQNLSLKPPLPKGVIRGCAECSTCQKVTARWHPKESCRPDIEDAPVFYPTEEDFEDTLKYIASIRAKAEPYGICRIVPPSSWKPPSPLQELVKWTSSKFATRVQRIDKLQNRDSLRKISRTHGQMKRKRRRHARMGVDCATSNGGLGDTESFGFEPGLEFTLETFKKYADDFKMQYFSGTDVDSLTGIQLKESHEPSVENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISGQVGSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEDAMRKHLPDLFEEQPDLLHKLVTQLSPSILKTEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYRKQGRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSDNLRWKDVCGKDGVLAKSLKMRIEMECIRRNTICSSSQAVKMENSFDATNEKECSLCFFDLHLSAVSCPCSPDKYACLNHAKQFCSCAQAARIFLFRYEINELSILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMHNSRLIKSSEGAELKDLALQQSSGYLKDLQWRESFTEVPKTSSGITGDFSSQRNNELAEAISTLKIKELLLKSNCLLKEIEKTNHDFQLRKEEHNGTVFNLTSASGQLSPKDVKHCVNPVSKKGRDDKASVLKPKNVILLSDDEGDNEPKGSVLDKEKESSLARQLEDSDRLAGADTKAILCYHDKDTNLITPLTDAAVMDEKDIVYQPQKKLKTGSAHVVPVKLTTLKK 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3871656 3877972 - Bda010079.2 Bda12g00339 17354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00339 920 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 702 - -
Bda12g00339 920 Gene3D Cupin 132 500 - -
Bda12g00339 920 PANTHER JUMONJI 14-RELATED 80 702 - -
Bda12g00339 920 SMART cupin_9 350 516 IPR003347 -
Bda12g00339 920 SMART JmjN_1 146 187 IPR003349 -
Bda12g00339 920 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Bda12g00339 920 ProSiteProfiles JmjC domain profile. 350 516 IPR003347 -
Bda12g00339 920 Pfam C5HC2 zinc finger 606 656 IPR004198 -
Bda12g00339 920 Pfam jmjN domain 148 181 IPR003349 -
Bda12g00339 920 MobiDBLite consensus disorder prediction 224 243 - -
Bda12g00339 920 Pfam JmjC domain, hydroxylase 383 499 IPR003347 -
Bda12g00339 920 SUPERFAMILY Clavaminate synthase-like 351 543 - -
Bda12g00339 920 MobiDBLite consensus disorder prediction 830 859 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00339 - - - jre:108997867 1169.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00098 Bda-Chr1:14265045 Bda12g00339 Bda-Chr12:3871656 0 dispersed
Bda04g00506 Bda-Chr4:53648625 Bda12g00339 Bda-Chr12:3871656 2.57E-179 dispersed
Bda09g00757 Bda-Chr9:13494967 Bda12g00339 Bda-Chr12:3871656 4.52E-61 dispersed
Bda12g00339 Bda-Chr12:3871656 Bda14g00068 Bda-Chr14:533524 1.21E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00339 . 1 878 JUMONJI Transcription Factor Family AT1G08620 55.6 7.6e-271 930.6
Bda01g00098 . 34 951 JUMONJI Transcription Factor Family AT1G30810 51.1 3.9e-247 851.3
Bda12g00339 . 128 734 JUMONJI Transcription Factor Family AT1G30810 55.6 8.7e-186 647.5
Bda12g00339 . 129 672 JUMONJI Transcription Factor Family AT2G34880 55.1 2.0e-171 599.7
Bda01g00098 . 64 935 JUMONJI Transcription Factor Family AT4G20400 51.1 6.5e-243 837.4
Bda12g00339 . 155 673 JUMONJI Transcription Factor Family AT4G20400 58.4 1.5e-178 623.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16769 PF02373 JmjC 3.60E-46 CL0029 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00339 Bda_Chr12 FPKM 1.994691 2.635475 3.566285 4.30944 14.025856 12.828701 12.23139 4.777004 4.55781