Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00339 ATGGGGACAAAACTTGTGCAAATTTGTGTCAAAGAAGAGAATGACGACTTTCCATCAGTTCCACCGGGTTTTGAGGCATTGACATCTTTTGCCGTCCAGAAGATAGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCTTGCCTTCCACTAGTATTTCAGAAACACAATCCATTCATATGGATATTAAAACGGAAAGCACTCTTGATACTAAGATAACAAGGTCCTTACGACCAAGACCATGTATTAACTATGGTCTATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGAGGGTTGAACAAAATTTATCTTTGAAGCCTCCTCTTCCCAAGGGTGTAATTCGGGGTTGTGCAGAGTGTAGTACTTGCCAAAAGGTTACTGCAAGATGGCATCCCAAAGAGTCTTGCAGACCCGATATTGAGGACGCGCCCGTTTTTTATCCAACTGAAGAGGACTTTGAAGATACCTTGAAATATATAGCTAGTATACGTGCAAAAGCTGAACCTTATGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTCTCCTTTACAGGAACTAGTGAAATGGACAAGTTCCAAATTTGCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCATTGAGAAAGATATCAAGGACTCATGGCCAAATGAAGAGAAAAAGAAGAAGACATGCACGCATGGGGGTAGATTGTGCTACGAGTAATGGAGGACTAGGAGACACTGAAAGCTTTGGATTTGAACCTGGTTTGGAGTTTACGTTGGAAACATTTAAAAAATATGCAGATGACTTCAAAATGCAGTATTTTAGTGGCACAGACGTTGATTCTTTAACTGGAATTCAATTGAAAGAGAGTCATGAGCCATCGGTGGAGAATATTGAGGGGGAATATTGGCGGATGGTAGAGAAACCTACCGAGGAAATTGAGGTGTTATATGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTGGCCAAGTTGGTTCAACTTCCGATGAAAAATATGTAACATCAGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTATGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCTTGGCTGTATGTTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGCGTCCCAGGGAAGGATGCCTGCAAATTAGAGGATGCTATGAGAAAGCATTTGCCTGATCTTTTTGAGGAACAGCCTGATTTACTTCATAAGCTGGTCACACAACTTTCCCCTTCCATATTAAAGACTGAGGGAGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATCGCCATAGAATTATACCGTAAGCAAGGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACTTCTGATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCAAAATCTCTCAAGATGCGGATTGAAATGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAACAGCTTTGATGCCACTAACGAGAAGGAATGCAGTTTATGCTTTTTTGACTTGCACCTCTCTGCAGTTAGTTGCCCTTGTTCCCCAGATAAATACGCATGCTTGAATCACGCGAAGCAGTTCTGCTCCTGTGCTCAGGCTGCTAGAATTTTCCTCTTCCGATATGAGATTAATGAATTGAGTATCCTTGTTGAGGCTTTGGAAGGGAAATTAAGCGCAATTTATAGATGGGCTAAACTGGACCTTGGATTGGCTCTAAGTTCTCACATCTCTAAAGACAAGATGCATAATAGTAGATTAATCAAATCATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCAAGTGGTTATCTTAAAGATTTACAGTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCCAGTGGAATCACTGGTGATTTCTCTTCTCAACGCAACAATGAATTAGCAGAAGCTATATCAACGTTGAAGATCAAAGAATTATTGTTGAAATCTAATTGTTTGTTAAAGGAAATTGAAAAGACGAATCATGACTTTCAATTGAGGAAAGAAGAACACAATGGTACTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCCGAAAGACGTAAAACATTGTGTAAATCCAGTTTCCAAAAAAGGAAGAGATGATAAGGCTTCAGTTTTGAAACCCAAGAATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGGATAAAGAAAAAGAAAGTTCTTTAGCGAGGCAATTAGAAGACTCTGACAGGTTGGCTGGAGCTGATACTAAGGCAATCCTTTGTTATCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTAATGGATGAGAAGGATATCGTTTATCAGCCTCAGAAGAAACTGAAAACTGGTTCAGCTCATGTTGTGCCAGTAAAATTGACCACCCTGAAAAAATAG 2763 40.03 MGTKLVQICVKEENDDFPSVPPGFEALTSFAVQKIEDNFQRGSDNLISCLPSTSISETQSIHMDIKTESTLDTKITRSLRPRPCINYGLYDSYCDGVFDSERVEQNLSLKPPLPKGVIRGCAECSTCQKVTARWHPKESCRPDIEDAPVFYPTEEDFEDTLKYIASIRAKAEPYGICRIVPPSSWKPPSPLQELVKWTSSKFATRVQRIDKLQNRDSLRKISRTHGQMKRKRRRHARMGVDCATSNGGLGDTESFGFEPGLEFTLETFKKYADDFKMQYFSGTDVDSLTGIQLKESHEPSVENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISGQVGSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEDAMRKHLPDLFEEQPDLLHKLVTQLSPSILKTEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYRKQGRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSDNLRWKDVCGKDGVLAKSLKMRIEMECIRRNTICSSSQAVKMENSFDATNEKECSLCFFDLHLSAVSCPCSPDKYACLNHAKQFCSCAQAARIFLFRYEINELSILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMHNSRLIKSSEGAELKDLALQQSSGYLKDLQWRESFTEVPKTSSGITGDFSSQRNNELAEAISTLKIKELLLKSNCLLKEIEKTNHDFQLRKEEHNGTVFNLTSASGQLSPKDVKHCVNPVSKKGRDDKASVLKPKNVILLSDDEGDNEPKGSVLDKEKESSLARQLEDSDRLAGADTKAILCYHDKDTNLITPLTDAAVMDEKDIVYQPQKKLKTGSAHVVPVKLTTLKK 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3871656 3877972 - Bda010079.2 Bda12g00339 17354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00339 920 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 702 - -
Bda12g00339 920 Gene3D Cupin 132 500 - -
Bda12g00339 920 PANTHER JUMONJI 14-RELATED 80 702 - -
Bda12g00339 920 SMART cupin_9 350 516 IPR003347 -
Bda12g00339 920 SMART JmjN_1 146 187 IPR003349 -
Bda12g00339 920 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Bda12g00339 920 ProSiteProfiles JmjC domain profile. 350 516 IPR003347 -
Bda12g00339 920 Pfam C5HC2 zinc finger 606 656 IPR004198 -
Bda12g00339 920 Pfam jmjN domain 148 181 IPR003349 -
Bda12g00339 920 MobiDBLite consensus disorder prediction 224 243 - -
Bda12g00339 920 Pfam JmjC domain, hydroxylase 383 499 IPR003347 -
Bda12g00339 920 SUPERFAMILY Clavaminate synthase-like 351 543 - -
Bda12g00339 920 MobiDBLite consensus disorder prediction 830 859 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00098 Bda-Chr1:14265045 Bda12g00339 Bda-Chr12:3871656 0 dispersed
Bda04g00506 Bda-Chr4:53648625 Bda12g00339 Bda-Chr12:3871656 2.57E-179 dispersed
Bda09g00757 Bda-Chr9:13494967 Bda12g00339 Bda-Chr12:3871656 4.52E-61 dispersed
Bda12g00339 Bda-Chr12:3871656 Bda14g00068 Bda-Chr14:533524 1.21E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16769 PF02373 JmjC 3.60E-46 CL0029 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00339 - - jre:108997867 1169.45