Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00350 ATGGAGGTTCGCTGGATCATCTTCTACCTTTTCGTTACTGTTTCTCTGGTTTTTGCTGCGGGAAACGGTCAATCTGTGATGAACAATGAAGTTTCTGTGTTGTTGTCACTGAAAGCCGGTGTAATCGATCCATTGGAGAGATTGAAGGATTGGAAAATGCCGAGTGATGCCGCCGGGGAAGGGCGTTCCCTACACTGCCGGTGGACTGGAGTTTCGTGCAACTCGGAAGGATTTGTGGAAAAACTCGACCTCTCCAGCTTGAATCTTAGTGGAACTGTTTCGGACTTCATTAACGACCTTCCAAGCCTCGCTTTCCTCAACATTTGCTGTAACGGTTTTGATTCATCTCTACCGGCATCTCTTTCGAATCTCACTTCTCTGAAGAGTTTCGACGTGAGTGAGAATAATTTCGTTGGGAAATTCCCCACAGGGCTTGGAAGTGCGTGGGGGCTTACTTCAATCAATGCGTCAAGTAATAATTTCTCCGGGTTTCTTCCTGAAGATATTGGAAATGCTACGAAACTCGAAATTATTGATTTCAGAGGGAGTTTTTTCGAAGGTTCGGTTCCTCTGTCTTTTAAAAATCTGAAGAATTTGAAGTTTCTTGGCCTTTCTGGGAATAATCTTACAGGAAAAATTCCTCAAGAACTCGGTGAACTCTCTTCTCTGGAGACATTGATAATTGGATACAATGAATTTGAAGGAGAAATTCCGTCTGGATTTGGAAATCTCGCTAATCTTCGTTATCTTGATTTGGCTTTTGGCAGTTTTAGTGGTCAAATTCCTCCTGAATTGGGTAAACTCAAAAATCTCACCACAGTCTATTTGTACAAAAACAGATTTTCAGGAAAAATTCCCCCTGAAATCTTTAACATTAGTTCTTTAGAATTTTTAGATCTCTCCGACAATCAGATTTCAGGAGAGATTCCTACGGAGATTGGAAATTTGAAGAATTTGCAGCTTTTGAACTTAATGTGCAATAATTTATCTGGTTCAATTCCAAACACATTGGCAGAGTTAACAAAGCTGGAAGTTCTTGCTCTGTGGAGAAACTCTTTCATTGGTTCTTTGCCGGAAAATCTCGGCCTCTACTCACCATTACAATGGCTAGATGTTTCTTCCAACTCTTTTTCAGGTGAAATTCCATCTGGTCTGTGTTACTCTGGAAATTTGACGAAACTTATATTCTTCAACAATTCATTGTCTGGTTCGATTCCGAAAAACCTGTCAATGTGTTCATCTCTAGTTCGTGTTAGATTGCAAAATAATCTATTATCAGGAACAATTCCAGATGGATTCGGAAATCTTCCGAGCCTTCAACGGCTTGAACTGGCAAGCAACAAGCTCGTAGGACAAATTCCAGAAGATTTTGCTTTGTCAACATCGCTTTCTTTTATTGATGTCTCCTATAACCACCTTGAGTTGACTCTTCCTTCTAGTTTATTTTCCATTCCCAATCTTCAGAATTTGATTGCTTCCAATAACAACTTGAAAGGCAATATCCCGGATGAGTTTCAAGGTTGTCCATCTCTTTCAGTGCTTGATCTTTCAAATAATCAACTTTCTGGAACAATTCCCGAGAGTATCGGTTCTTGCGAAAAGCTTGTCAATCTCAACCTTCGAAACAACAAGTTCACCGGGGAAATTCCGAAAGTTCTAGCAACAATGCCTACTCTAGCCATTCTCGATCTTTCGAACAACTCCCTAATTGGTCGAATACCTGAAAATTTCGGAAGCTCTCCAGCATTAGAGATGCTAAATGTGTCTTACAATAAACTCGAAGGGCCGGTACCTGCAAATGGGATTTTAACATCCATTAATCCTAATGATCTTGCAGGAAATTCCGGTCTTTGTGGAGGCGTTCTTCCTCCGTGTACTAAAAGCTTTGAATCGATAAACGGACGGCTGAAAAATACGAGAAATGTTAGGGTTTTGATTGGGTTTGTCATTGCAATTTCAGTTCTTCTCGTTCTAGTAATTTCATTCTTTGCAGGGAGATCATTGTACAGAAGGTGGTACTTGTACAACAGCTTCTTATATGATTGGTTTAAGAAGAGCAATGACGAATGGCCATGGAGATTAGTAGCTTTTCAAAGAGTTAATTTCACAAGCTCCGATATTCTAGCTTGCATAAAAGAGACCAATGTGATCGGAATGGGCGGAACTGGTATCGTTTACAAAGCAGAAACTTACGGACTGAACGGAGTAGTTGCAGTGAAAAAGCTATGGGGATCAGGATCAGACATTGAAAGGGGAAATGATCTCCTAGGAGAGGTGAATCTTCTGGGTAGGCTTCGGCATCGAAACATCGTAAGGCTGTTAGGCTATCTTCACAATGATCGTGATGTAATGATCTTGTACGAGTATATGTCGAATGGAAATCTCGGAACTGCTCTTCATGGTAAAGGAACAGAGAAATTATTGGTTGATTGGGTTTGTAGATATAATATTGCAGTTGGTGTGGCACAAGGATTGAATTATCTTCACCACGATTGTCATCCTCCGATCATCCATCGAGATATCAAGACTAACAATATATTGCTCGACGAGAATCTGGAAGCGAGGATTGCTGATTTTGGGTTGGCGAGGATGATGATACATGAGAATGAAACTGTCTCGATGGTAGCAGGATCTTATGGATACATTGCCCCTGAATATGGATACACAATGAAAGTTGATGAGAAGAGTGATGTATACAGCTATGGAGTGGTGCTTCTAGAGCTTCTGACAGGAAAAATGCCATCAGAATCTGAATTTGGTGAGTCTGTAAACATAGTGGAATGGGTTAGAAGAAAACTCAGCAAAAGGGACTTGGAAGGGGCACTAGACCCAGAAATTGTAGGAAACTGCAAACACGTTGAAGAAGAAATGCTTCTTGTTCTTAGAATTGCTCTTGTCTGCACTGCAAAACTTCCTAAAGATAGACCTTCCATGAGAGATATAATCACAATGCTTGGAGAAGCAAAGCCAAGAAGAAAGAGCATTTGCAACAATGGAGGAGGAGGGCAAATTGGTGGGAAAGAAAAATCTTCCTTCAGCTCCATTTCACCCTTCTCCCGACTTCTCTGA 3069 40.83 MEVRWIIFYLFVTVSLVFAAGNGQSVMNNEVSVLLSLKAGVIDPLERLKDWKMPSDAAGEGRSLHCRWTGVSCNSEGFVEKLDLSSLNLSGTVSDFINDLPSLAFLNICCNGFDSSLPASLSNLTSLKSFDVSENNFVGKFPTGLGSAWGLTSINASSNNFSGFLPEDIGNATKLEIIDFRGSFFEGSVPLSFKNLKNLKFLGLSGNNLTGKIPQELGELSSLETLIIGYNEFEGEIPSGFGNLANLRYLDLAFGSFSGQIPPELGKLKNLTTVYLYKNRFSGKIPPEIFNISSLEFLDLSDNQISGEIPTEIGNLKNLQLLNLMCNNLSGSIPNTLAELTKLEVLALWRNSFIGSLPENLGLYSPLQWLDVSSNSFSGEIPSGLCYSGNLTKLIFFNNSLSGSIPKNLSMCSSLVRVRLQNNLLSGTIPDGFGNLPSLQRLELASNKLVGQIPEDFALSTSLSFIDVSYNHLELTLPSSLFSIPNLQNLIASNNNLKGNIPDEFQGCPSLSVLDLSNNQLSGTIPESIGSCEKLVNLNLRNNKFTGEIPKVLATMPTLAILDLSNNSLIGRIPENFGSSPALEMLNVSYNKLEGPVPANGILTSINPNDLAGNSGLCGGVLPPCTKSFESINGRLKNTRNVRVLIGFVIAISVLLVLVISFFAGRSLYRRWYLYNSFLYDWFKKSNDEWPWRLVAFQRVNFTSSDILACIKETNVIGMGGTGIVYKAETYGLNGVVAVKKLWGSGSDIERGNDLLGEVNLLGRLRHRNIVRLLGYLHNDRDVMILYEYMSNGNLGTALHGKGTEKLLVDWVCRYNIAVGVAQGLNYLHHDCHPPIIHRDIKTNNILLDENLEARIADFGLARMMIHENETVSMVAGSYGYIAPEYGYTMKVDEKSDVYSYGVVLLELLTGKMPSESEFGESVNIVEWVRRKLSKRDLEGALDPEIVGNCKHVEEEMLLVLRIALVCTAKLPKDRPSMRDIITMLGEAKPRRKSICNNGGGGQIGGKEKSSFSSISPFSRLL 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4028559 4031837 - Bda010088.1 Bda12g00350 17365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00350 1022 Gene3D Ribonuclease Inhibitor 284 387 IPR032675 -
Bda12g00350 1022 Gene3D Transferase(Phosphotransferase) domain 1 794 997 - -
Bda12g00350 1022 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1 7 1002 - -
Bda12g00350 1022 PANTHER UNNAMED PRODUCT 7 1002 - -
Bda12g00350 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Bda12g00350 1022 ProSiteProfiles Leucine-rich repeat profile. 510 532 IPR001611 GO:0005515
Bda12g00350 1022 SUPERFAMILY Protein kinase-like (PK-like) 707 985 IPR011009 -
Bda12g00350 1022 SUPERFAMILY RNI-like 257 598 - -
Bda12g00350 1022 MobiDBLite consensus disorder prediction 993 1022 - -
Bda12g00350 1022 Gene3D Ribonuclease Inhibitor 181 283 IPR032675 -
Bda12g00350 1022 Gene3D Ribonuclease Inhibitor 496 625 IPR032675 -
Bda12g00350 1022 SMART serkin_6 711 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00350 1022 MobiDBLite consensus disorder prediction 1007 1022 - -
Bda12g00350 1022 Pfam Protein kinase domain 713 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00350 1022 PRINTS Leucine-rich repeat signature 511 524 - -
Bda12g00350 1022 PRINTS Leucine-rich repeat signature 556 569 - -
Bda12g00350 1022 ProSitePatterns Protein kinases ATP-binding region signature. 717 741 IPR017441 GO:0005524
Bda12g00350 1022 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Bda12g00350 1022 Pfam Leucine rich repeat 485 545 IPR001611 GO:0005515
Bda12g00350 1022 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Bda12g00350 1022 Gene3D Ribonuclease Inhibitor 388 495 IPR032675 -
Bda12g00350 1022 SMART LRR_typ_2 268 292 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 556 580 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 484 507 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 508 532 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 340 364 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 124 148 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 196 220 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 293 316 IPR003591 -
Bda12g00350 1022 SMART LRR_typ_2 436 459 IPR003591 -
Bda12g00350 1022 Pfam Leucine Rich repeat 293 308 IPR001611 GO:0005515
Bda12g00350 1022 ProSiteProfiles Leucine-rich repeat profile. 294 316 IPR001611 GO:0005515
Bda12g00350 1022 ProSiteProfiles Protein kinase domain profile. 711 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00350 1022 Gene3D Phosphorylase Kinase; domain 1 711 793 - -
Bda12g00350 1022 SUPERFAMILY L domain-like 65 311 - -
Bda12g00350 1022 Pfam Leucine rich repeat N-terminal domain 28 74 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02040 Bda-Chr1:56668240 Bda12g00350 Bda-Chr12:4028559 1.09E-13 dispersed
Bda03g00601 Bda-Chr3:4985259 Bda12g00350 Bda-Chr12:4028559 2.55E-10 dispersed
Bda07g01792 Bda-Chr7:33892355 Bda12g00350 Bda-Chr12:4028559 0 dispersed
Bda08g00430 Bda-Chr8:4352745 Bda12g00350 Bda-Chr12:4028559 2.21E-18 dispersed
Bda10g00028 Bda-Chr10:508517 Bda12g00350 Bda-Chr12:4028559 0 dispersed
Bda11g00825 Bda-Chr11:8177889 Bda12g00350 Bda-Chr12:4028559 2.26E-157 dispersed
Bda11g01541 Bda-Chr11:47731550 Bda12g00350 Bda-Chr12:4028559 0 dispersed
Bda12g00350 Bda-Chr12:4028559 Bda14g01625 Bda-Chr14:41485244 2.91E-57 dispersed
Bda15g00530 Bda-Chr15:8338555 Bda12g00350 Bda-Chr12:4028559 4.25E-65 dispersed
Bda12g00350 Bda-Chr12:4028559 Bda05g00872 Bda-Chr5:57171543 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69962 PF00069 Pkinase 3.50E-47 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00350 - - mnt:21407217 1485.32