Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00353 ATGGAAGCGAATGAAAACCCACTCAGCCCCTACTACCACCTCCAGCAGCAGCACCACCACCACCAGAGCCCCACCACTGCGTCAACCACCGCTACCATCTTCACGTCATCCACCAATGGCCTTCTTCCAAGTGCCCTTCATATGTCTTCTCCGGCCACTGCGACAACCACTGACACAGGGGCCCACATGCTCTACCCTCATTCTGCGCCGTCTGCGGCGGTGTCTCAGTCCCCGTTGGAATCTGTCCGGCGGAAGAGAGGGAGACCCAGAAAGTATGGCACCCCAGAAGAGGCTTTAGCCGCGAAGAAAGCTGCGACCGCCTCCGCCCATTCTTCCACTTCGAGGGAGAAGAAGCACCGGGGTTCTTCTTTTGCTCCTTCTGCCTCTTCGTTTTCTGAATCTTCGAAGAAATACCAACTAGGTGCTCTCGGAAACGCTGGACAAGGTTTCACACCACACGTACTCAATGTTGCAGCCGGTGAGGACGTGGGCCAAAAAATTATGTTGTTCATGCAACAAAGTAAGCGGGAAATGTGTGTTCTTTCTGCATCAGGGTCAATCTCTAATGCAGCTCTCCGACAGCCAGCTACATCGGGAGGCAATATCGCATATGAGGGTCGTTTTGAGATTATCTCACTAAGTGGATCATATGTGCGAACTGATCTCGGAGGGAGGACCGGTGGCCTCAGTGTATGTCTGTCCAGTGCCGATGGCCAAATCGTTGGGGGAGGAGTTGGTGGGCCTTTGAAAGCCTTAGGACCCGTTCAGGTCATTGTGGGTACATTTCAAATGGACTCAAAGAAAGAAGCAATCAGCGGAGCGAAAGGCGATGCAGCTGTAAGCAAGTTGCCATCAATCGGTGGCCTATCAGGATCAAGTTTAGGCTATCGTTCAACAATCGAGCCATCTGGGAGAAATCCCATGAGGGGAAACGACGATCATCAAGTAATGGGCAGTAGCCATTTTATCCTTCAACCCCATGCTGTACACTTATCTTCACGAACCACCGATTGGAGGAGCGGTTCAGATCCTACTGCCACCGCGGGTTATGAATTGGCAGTGAGAGTCGGTCGCGGGCCAAACCAATCTCGAGAAAACGGAGACTACGATCAGATGCCGGACTAG 1125 52.62 MEANENPLSPYYHLQQQHHHHQSPTTASTTATIFTSSTNGLLPSALHMSSPATATTTDTGAHMLYPHSAPSAAVSQSPLESVRRKRGRPRKYGTPEEALAAKKAATASAHSSTSREKKHRGSSFAPSASSFSESSKKYQLGALGNAGQGFTPHVLNVAAGEDVGQKIMLFMQQSKREMCVLSASGSISNAALRQPATSGGNIAYEGRFEIISLSGSYVRTDLGGRTGGLSVCLSSADGQIVGGGVGGPLKALGPVQVIVGTFQMDSKKEAISGAKGDAAVSKLPSIGGLSGSSLGYRSTIEPSGRNPMRGNDDHQVMGSSHFILQPHAVHLSSRTTDWRSGSDPTATAGYELAVRVGRGPNQSRENGDYDQMPD 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4068711 4073364 + Bda010092.1 Bda12g00353 17368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00353 374 ProSiteProfiles PPC domain profile profile. 146 284 IPR005175 -
Bda12g00353 374 MobiDBLite consensus disorder prediction 353 374 - -
Bda12g00353 374 MobiDBLite consensus disorder prediction 45 130 - -
Bda12g00353 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 263 IPR005175 -
Bda12g00353 374 MobiDBLite consensus disorder prediction 294 316 - -
Bda12g00353 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 365 IPR039605 GO:0003680
Bda12g00353 374 Gene3D - 152 276 - -
Bda12g00353 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 26 365 - -
Bda12g00353 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 262 - -
Bda12g00353 374 MobiDBLite consensus disorder prediction 45 62 - -
Bda12g00353 374 CDD DUF296 151 262 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00353 Bda-Chr12:4068711 Bda15g00752 Bda-Chr15:11110255 2.24E-47 dispersed
Bda12g00353 Bda-Chr12:4068711 Bda11g00244 Bda-Chr11:2898066 1.66E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00353 - - mnt:21407278 419.083