Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00371 | ATGGAAATGAATACGCCTGACGGGATTGGGGATGATTTCTTCGAGCAGATTTTGGCAGTGCCTCCTGCTTTTAATGGGGGAGAGTCGGCTGAGTATGGCGGGAGAGAGGTGGGCTCTGTGGCTATGGCGTTACAGTTAGGGTCTGGATTAGGAGGAAGTGGAGATGATTGTGGTGGCTCCGGAGGTGAATTGAGAGGGACCGCCTTGCAAGGGTTGGGTATGCCGCTAGGATTGAACTTTGAACGGAGCTTTTTCAGGCGAGGGAGATTTGGAGAAGAGATGGAAGCTAATGGCCGTAACAATGAGAATACAAATGGTTCTTCTTCTGCTACTTCTGGAATTTCTGAAAGAGATTCCGTGAATATGAATGCTTTATTCCCAGCTTTTGAACATTTACAATCTCAGCCTGTTAGGCCAGTGCCACCTCCTTCCCAACTACACCAGCCCTTCAATGGTCAACCAACATCTGGGCAAGTTCCTGCTGTATCCCAACTACCTACGATGCGTCCTCGGGTTCGAGCAAGAAGAGGACAAGCAACGGATCCTCACAGCATTGCAGAGAGGTTACGAAGGGAACGCATTGCAGAAAGAATGAAGGCTTTGCAGGAGCTGGTTCCTGGTTGTAACAAGTCGGATAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTCAAGTTTTTAAGGCTTCAAGTCAAGGTTCTGAGCATGAGCAGACTAGGTGGAGCGGGTGTAGGTCAGCTCCTTCTGGATAGACCCGGATTGGGTGTAGCTGAGGGAATTGAAGGTGGAACTGATCAACAAGTTTGGGAAAAATGGTCAACGGATGGAACAGAGCAACAAGTAGCCAAATTGATGGAAGAAAACGTTGGAGCTGCCATGCAATTTCTTCAATCAAAGGCTCTTTGCATTATGCCCATATCATTAGCTTCTGCAATTTTCAGAACCCACCAATTGGACACGCAGATGACAGGTTAA | 975 | 47.69 | MEMNTPDGIGDDFFEQILAVPPAFNGGESAEYGGREVGSVAMALQLGSGLGGSGDDCGGSGGELRGTALQGLGMPLGLNFERSFFRRGRFGEEMEANGRNNENTNGSSSATSGISERDSVNMNALFPAFEHLQSQPVRPVPPPSQLHQPFNGQPTSGQVPAVSQLPTMRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPGCNKSDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGVGQLLLDRPGLGVAEGIEGGTDQQVWEKWSTDGTEQQVAKLMEENVGAAMQFLQSKALCIMPISLASAIFRTHQLDTQMTG | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 4266003 | 4269738 | - | Bda010113.1 | Bda12g00371 | 17386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00371 | 324 | MobiDBLite | consensus disorder prediction | 97 | 115 | - | - | |
| Bda12g00371 | 324 | MobiDBLite | consensus disorder prediction | 94 | 115 | - | - | |
| Bda12g00371 | 324 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 317 | - | - | |
| Bda12g00371 | 324 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 317 | - | - | |
| Bda12g00371 | 324 | Pfam | Helix-loop-helix DNA-binding domain | 183 | 227 | IPR011598 | GO:0046983 | |
| Bda12g00371 | 324 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 176 | 237 | IPR036638 | GO:0046983 | |
| Bda12g00371 | 324 | SMART | finulus | 184 | 233 | IPR011598 | GO:0046983 | |
| Bda12g00371 | 324 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 178 | 227 | IPR011598 | GO:0046983 | |
| Bda12g00371 | 324 | Gene3D | - | 173 | 235 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda10g00545 | Bda-Chr10:39329297 | Bda12g00371 | Bda-Chr12:4266003 | 4.27E-86 | dispersed | |
| Bda12g00371 | Bda-Chr12:4266003 | Bda06g00931 | Bda-Chr6:25133007 | 5.71E-23 | dispersed | |
| Bda12g00025 | Bda-Chr12:138065 | Bda12g00371 | Bda-Chr12:4266003 | 1.74E-19 | transposed | |
| Bda12g00371 | Bda-Chr12:4266003 | Bda07g01202 | Bda-Chr7:14414824 | 1.10E-179 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16772 | PF00010 | HLH | 7.00E-07 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00371 | - | - | zju:107412218 | 377.096 |