Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00426 ATGGGACACTTGTCTTCCATGTTAGATGGACTAGCACGCTCGTTTTCGACGAGGAAGTGGCGAAACATTGACAATGTCAGGGGAAGAGAAGCTGCAGGAGCCATGGAGAAGGATGCAAAGAAAAAGGATTTAATTTTACGCACATCTGGTAGTGTAAACATTGATGGTTCGAGCAATTTTGCCTCCGTGTTTTCTAAGAAAGGCGAGAAAGGAGTAAATCAAGATTGTTGCATAATTTGGGAGGAATTTGGACATCGAGAGGACATGATCTTCTGCGGGATTTTCGATGGTCATGGGCCATGGGGTCATTTCGTTGCGAAAAATGCCCGAGAATCAATGCCATCATCCCTTTTGTGTAATTGGCAAGAAGCTGTATCCCGATCGTCCTACATAGGAGACGTCGACTCTGACTATGAAAAAAACCACCAACGCTTCGAGCTATGGAAAAACTCTTACATAAAAACATGTGCGGCTATTGATCAGCAGCTTGAGCATCATCGGAAAATCGACTCGTTTTACAGTGGAACGACTGCCTTGTCAATTGTCAAACAGGGTGAGCTAATAGTCATGGCTAATGTGGGAGACTCTCGAGCCGTATTAGCCACATCGTTGGATGACGGAAGCCTAGTTCCCGTTCAACTTACTGTCGATTTCAAGCCGAATTTGCCTCAGGAGGCAGAGCGGATAGCTCAGTGCAACGGCCGAGTGTTTTGCTTAGACGACGAGCCTGGAGTTCACCGGGTGTGGCTACCGCATAAGCAATCACCTGGACTGGCCATGTCCCGAGCATTGGGTGATTACTGTGTCAAAGGCTTCGGACTCATTTCGGTTCCAGAAGTGACTCAGAGAACTATAACAATTGAAGATCACTTTGTTATCCTGGCAACTGATGGGGTGTGGGATGTTATTTCGAATCAAGAAGCCGTGCTGATTGTTTCGTCAGCACCGGAACGAGCAAAATCGGCCAAGCTTCTGGTGAAGGCAGCGGGTCGAGCATGGAGACGCAAGCGGCCGGGAATTGCCAGGGACGACATATCGGCCATATGTCTCTTCCTTCATCCTTCTCCTTAA 1071 47.71 MGHLSSMLDGLARSFSTRKWRNIDNVRGREAAGAMEKDAKKKDLILRTSGSVNIDGSSNFASVFSKKGEKGVNQDCCIIWEEFGHREDMIFCGIFDGHGPWGHFVAKNARESMPSSLLCNWQEAVSRSSYIGDVDSDYEKNHQRFELWKNSYIKTCAAIDQQLEHHRKIDSFYSGTTALSIVKQGELIVMANVGDSRAVLATSLDDGSLVPVQLTVDFKPNLPQEAERIAQCNGRVFCLDDEPGVHRVWLPHKQSPGLAMSRALGDYCVKGFGLISVPEVTQRTITIEDHFVILATDGVWDVISNQEAVLIVSSAPERAKSAKLLVKAAGRAWRRKRPGIARDDISAICLFLHPSP 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5185339 5186819 - Bda010177.1 Bda12g00426 17441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00426 356 CDD PP2Cc 59 352 IPR001932 -
Bda12g00426 356 PANTHER ALPHABET, ISOFORM E-RELATED 1 356 - -
Bda12g00426 356 SUPERFAMILY PP2C-like 58 354 IPR036457 -
Bda12g00426 356 SMART PP2C_4 46 350 IPR001932 -
Bda12g00426 356 Gene3D - 52 353 IPR036457 -
Bda12g00426 356 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 356 - -
Bda12g00426 356 Pfam Protein phosphatase 2C 84 321 IPR001932 -
Bda12g00426 356 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00426 Bda-Chr12:5185339 Bda13g01843 Bda-Chr13:42548903 4.73E-107 dispersed
Bda12g00426 Bda-Chr12:5185339 Bda07g01283 Bda-Chr7:15674694 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00426 - - jre:108985402 553.903