Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00427 ATGGCTTATGGCGATGATTCTAAAAAGACCAAGAGATTCGCCATTATTGGCATCTCTTCCTTCTTGCTCGTCGCCATGGTTGTCGCTGTTACCGTCGGAGTTAACATCAACAACGAGTCCTCCGACCCTGTGAGCAGCAACAAATCTCACGAGGTTTCTTCCTCCATTAAAGCCATCAAAGCTATCTGCGAAACAACGGATTACAAAACCGACTGCGTCAGTAGCCTCCAGGCTTCGGGCGGAGACACAAGCGACCCAAAAGATCTGATTCAAGCCGGGTTCAGAGCCGCCATTAAATACGTCAGGGAAGCTGCGAAGAAATCAACTACTCTTGAAGAGCTGGAGAAAGATCCGAGAGCTGCCAAGGCGCTTGCCAATTGTAAAGAGCTGATGGATTCCGCCATTGTTGATCTGCAACAATCTGTTGACAAAATGGGAGAGTTTGATTTTTCGAAGTTGGATGAAATGCTTGATGATTTGAAGATTTGGCTCAGTGCTTCGATCACGTATCAAGAGACTTGTTTGGATGGATTCGAAAACACGACGAGCTCGGCCGCCGAGAAAATGAAATCGGCGCTGAAAACTTCGATGAGATTGAGCAGCAATGCCCTCGCAATGGTGTCGGAACTTTCCTCAGTCCTCACCGACTTCCATATCCCCGATTTCAGCCGCCGGCTTCTCTCCCATGATGAATTTCCGACCTGGGTCGATCCTAGAGTGAGAAGACTCCTCAGTTCTAACCGGAGAAGAATTAGGGCAGACGTCATCGTCGCTAAGGATAGAACTGGCCATTACAAGACTATAAACGAAGCTTTATTACATGTTCCAAAACACAGCAATAAGACCTTTGTTATGTACATTAAAGCCGGAGTTTACCACGAAAACGTTCAGGTTAACAGGTCAATGACTCACTTGATGATGATCGGCGATGGAGCTGGAAGAACCAGAATCACCGGAAACAAGAACTTCATTGACGGCACCCCGACCTTTAAAACAGCAACCGTCGCTGTTCTTGGGGACTTCTTTATAGCAAAAGACATTGGATTTGAGAATACTGCCGGCGCCGCGAAACATCAGGCAGTAGCCCTAAGAGTCCAGTCGGACATGTCCATCTTTTACAGATGCTCCATGGATGGCTACCAAGACACTCTCTACACCCACACTAAGCGCCAATACTACCGAGACTGCACAGTCTCCGGCACCATCGACTTCATCTTCGGTGACGCCTCCGCCGTGTTTCAGAACTGCACTTTTCTCGTTCGGAAGCCCATGGATAACCAGCAATGCATCGTCACCGCGCAAGGAAGAAAGGATGTTCGCCAACCATCAGCCATCATTCTCCAAAACTGCAGAATCACATCCGATGCCAGTTATTTCCCGGTGCGGAAGCAATTCCAAGCGTATCTCGGTCGTCCGTGGAAGGAATACTCGAGGACGATAATCATGGAGACTTTCATCGACGATCTGATTCAGCCCGAAGGTTGGATGCCATGGATGGAAAATTTCGGGCTGAAAACATGCTTCTATTCAGAGTACAACAACTTCGGTCCTGGATCAACCAAATCGAAACGAGTTAAGTGGAGAGGAATCAAGAACATAACAGATCAAACAGCGATGAGTTTTACACCGGGGAGTTTCATCAGAGGAAATAAGTGGATTAAAGCTAGTGGAGTTCCTTATACTCCCGGAATGTTCTTTGTTCAGAAGAAGAAAGCCGATTTACCATGA 1728 47.4 MAYGDDSKKTKRFAIIGISSFLLVAMVVAVTVGVNINNESSDPVSSNKSHEVSSSIKAIKAICETTDYKTDCVSSLQASGGDTSDPKDLIQAGFRAAIKYVREAAKKSTTLEELEKDPRAAKALANCKELMDSAIVDLQQSVDKMGEFDFSKLDEMLDDLKIWLSASITYQETCLDGFENTTSSAAEKMKSALKTSMRLSSNALAMVSELSSVLTDFHIPDFSRRLLSHDEFPTWVDPRVRRLLSSNRRRIRADVIVAKDRTGHYKTINEALLHVPKHSNKTFVMYIKAGVYHENVQVNRSMTHLMMIGDGAGRTRITGNKNFIDGTPTFKTATVAVLGDFFIAKDIGFENTAGAAKHQAVALRVQSDMSIFYRCSMDGYQDTLYTHTKRQYYRDCTVSGTIDFIFGDASAVFQNCTFLVRKPMDNQQCIVTAQGRKDVRQPSAIILQNCRITSDASYFPVRKQFQAYLGRPWKEYSRTIIMETFIDDLIQPEGWMPWMENFGLKTCFYSEYNNFGPGSTKSKRVKWRGIKNITDQTAMSFTPGSFIRGNKWIKASGVPYTPGMFFVQKKKADLP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5239006 5240913 + Bda010182.1 Bda12g00427 17442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00427 575 PANTHER PECTINESTERASE 14 568 - -
Bda12g00427 575 CDD PMEI-like_3 61 212 - -
Bda12g00427 575 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Bda12g00427 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 211 IPR035513 -
Bda12g00427 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Bda12g00427 575 SMART PMEI_2 54 206 IPR006501 GO:0004857
Bda12g00427 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 210 IPR006501 GO:0004857
Bda12g00427 575 Gene3D - 248 564 IPR012334 -
Bda12g00427 575 Pfam Pectinesterase 254 550 IPR000070 GO:0030599|GO:0042545
Bda12g00427 575 PANTHER PECTINESTERASE 14 568 - -
Bda12g00427 575 SUPERFAMILY Pectin lyase-like 252 563 IPR011050 -
Bda12g00427 575 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00625 Bda-Chr5:54329566 Bda12g00427 Bda-Chr12:5239006 6.30E-156 dispersed
Bda07g00904 Bda-Chr7:10638223 Bda12g00427 Bda-Chr12:5239006 7.76E-149 dispersed
Bda08g00299 Bda-Chr8:3130964 Bda12g00427 Bda-Chr12:5239006 3.73E-65 dispersed
Bda08g01087 Bda-Chr8:23953354 Bda12g00427 Bda-Chr12:5239006 0 dispersed
Bda11g00081 Bda-Chr11:968806 Bda12g00427 Bda-Chr12:5239006 1.56E-167 dispersed
Bda12g00427 Bda-Chr12:5239006 Bda12g01041 Bda-Chr12:42213162 2.39E-140 dispersed
Bda12g00427 Bda-Chr12:5239006 Bda12g00428 Bda-Chr12:5272201 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00427 K01051 - csv:101207393 774.622