Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00428 GCCATCCAAGCTATCTGCAAAATAACCAATTACAAAACTGAGTGCATCAACAGCCTCCAGGGTTCCGCTGGAGGCATAACCAACCCAAAACTTCTGATTCAAGCCGCGTTCAAAGCCACTATTAAATACATCAATGAAGCTTCCAAGAAATCATGTGCTCTTGGAGAGCAGGAGAAAGAACCAAGAGCTGTCAAGGCGCTTGATAGTTGCAAAGAACTAATGGATTCCGCCATTGTTGATCTGCAAAAATCTTTTGAAAAAATAGGAGTGTTCGATTTCACAAAGTTGGATGAAATGGTTGAGGATTTGAAGATTTGGCTCAGTGCTTCGATCACGTATCAAGAGACTTGTTTGGATGGATTCCAAAACACGACCGGCACGGCTGCCGAGACGATGAAATTGGCGCTGCAAAATTCGATGAGATCGAGCAGTAACTGGCCTTGCAATGCCATCCTCAAAATCTTCCAAATCGCCGATTTCGGCCGCCAGCTTCCCTCCAACGATAAACATCCCTCCCACGATAAACACACCGTCGGCTACGATTCTAGAGTCAGTAAACTTCTCAGTTCTGACGGGATAACAATCGAGGCCGACATTGTCGTTGCTAAGGACAAAACTGGCCAGTACAGCACTATAAACGAAGCCTTATTACATGTTCCGAAACAGAGCAAGAAGACCTTCGTGATGTACATCAAAGCCGGAGTTTACAACGAAAACGTTCAGATCAACAGTTCAATGACTAACTTGATGATGATCGGCGATGGCGCTGGAAAAACCAGAATCACCGGTTACAAGAACTTTGTTGACGGCACCCCTACCTGCAAAACAGCAACAGTTGCTGTTCTTGGGGACTTCTTCATAGCAAAAGACATTGGATTTGAGAACACAGCTGGGCCCGAGAAACACCAGGCTGTAGCCCTGAGAGTCCAATCAGACATGTCCATCTTTTACCGATGCTCAATGGATGGCTACCAAGACACTCTCTACACCCACACTAAGCGCCAATTCTACCGCGAATGCACCATCTCCGGCACTATCGACTTCGTCTTCGGCGACGCGGCCGCCGTCTTCCAAAACTGCACTTTTCTCGTCCGAAAGCCAATGGATCAGCAGCAATGCACCGTCACCGCGCAAGGACGAAAGGAGGATCACCAACCATCTGCCATCCAATTCCAAGCGTATCTCGGTCGTCCGTGGAAGGAATACTCGAGGACGATAATCATGGAATCTTTCATCGATGACCTTATTCAGGCCGATGGTTGGATGCCATGGACCGGCGATTTCGCGCTGAACACATGCTTCTATTCAGAGTACAATAATTCCGGACCTGGATCGAACAAATCGAAACGAGTTCAGTGGAAAGGAATCAAGAGCATAAACGATCAAACAGCGATGAGTTTTACGGCGGGGAGCTTCATCAGAGGAAATGAGTGGATCAAAGCTAGTGGAGTTCCTTATACTTCGGGAATGTTCTCTGTTAATCAGCAGAAAAGCTGA 1497 47.03 AIQAICKITNYKTECINSLQGSAGGITNPKLLIQAAFKATIKYINEASKKSCALGEQEKEPRAVKALDSCKELMDSAIVDLQKSFEKIGVFDFTKLDEMVEDLKIWLSASITYQETCLDGFQNTTGTAAETMKLALQNSMRSSSNWPCNAILKIFQIADFGRQLPSNDKHPSHDKHTVGYDSRVSKLLSSDGITIEADIVVAKDKTGQYSTINEALLHVPKQSKKTFVMYIKAGVYNENVQINSSMTNLMMIGDGAGKTRITGYKNFVDGTPTCKTATVAVLGDFFIAKDIGFENTAGPEKHQAVALRVQSDMSIFYRCSMDGYQDTLYTHTKRQFYRECTISGTIDFVFGDAAAVFQNCTFLVRKPMDQQQCTVTAQGRKEDHQPSAIQFQAYLGRPWKEYSRTIIMESFIDDLIQADGWMPWTGDFALNTCFYSEYNNSGPGSNKSKRVQWKGIKSINDQTAMSFTAGSFIRGNEWIKASGVPYTSGMFSVNQQKS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5272201 5275433 + Bda010183.1 Bda12g00428 17443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00428 498 CDD PMEI-like_3 4 145 - -
Bda12g00428 498 Pfam Pectinesterase 198 476 IPR000070 GO:0030599|GO:0042545
Bda12g00428 498 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 135 IPR006501 GO:0004857
Bda12g00428 498 Pfam Plant invertase/pectin methylesterase inhibitor 2 133 IPR006501 GO:0004857
Bda12g00428 498 SUPERFAMILY Pectin lyase-like 194 489 IPR011050 -
Bda12g00428 498 SMART PMEI_2 1 151 IPR006501 GO:0004857
Bda12g00428 498 Gene3D - 192 490 IPR012334 -
Bda12g00428 498 PANTHER PECTINESTERASE 1 493 - -
Bda12g00428 498 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 146 IPR035513 -
Bda12g00428 498 ProSitePatterns Pectinesterase signature 2. 342 351 IPR033131 -
Bda12g00428 498 PANTHER PECTINESTERASE 1 493 - -
Bda12g00428 498 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 154 IPR035513 -
Bda12g00428 498 ProSitePatterns Pectinesterase signature 1. 223 242 IPR018040 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g01087 Bda12g00428 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00428 Bda-Chr12:5272201 Bda07g00904 Bda-Chr7:10638223 2.09E-130 dispersed
Bda12g00427 Bda-Chr12:5239006 Bda12g00428 Bda-Chr12:5272201 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00428 K01051 - mnt:21385503 615.92