Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00431 | ATGAACAGTATTGAAGAATCAAGAGCGAGGTCTCCTATCGTTCCCCTTGCAACCCTAATTGGTCGTGAGCTCAGGAAAGAGAAGATTGAGAAACCTGTCGTGAAGTATGGACAGGCTGCTTTGGCTAGGAAAGGAGAGGATTTGTTTTTGATCAAACCCGAATGCCAAAGGATTCCCGGAAACTCGACGACATTATTTTCGGTCTTTGCGATATTTGATGGCCATAATGGCATATCAGCTGCTATATTTACAAAGGAGCATTTATTGGGTAATGTCTTGAGTGCAATTCCTCCAGGGATTAGTCGGGAGGAGTGGCTTCAAACTCTTCCCCGTGCAATGGTTGCAGGTTTTGTGAAAACAGACATAGAGTTTCAGCAGAAAGGCACGTTGAAGATTTCCTTTTTGCTAAATCAATTCATCTATCATTTTCTTGTTGGTCTGCATCTACATTCTTGTTTTGTTCATCACAGGGTTGGTCCCCTCCGTTGCTGGCCTGGTGGATTATGTCTTTCTAGGTCCATCGGAGACACAGATGTGGGAGAGTTTATTGTTCCAATACCCCACGTTAAACAAGTAAAGCTTTCAAAAGCTGGTGGACGCCTAATAATAGCTTCTGATGGAATATGGGACGCATTATCTTCCAATACGGCTGCCAAGTCTTGTCGCGGTTTACCTGCAGACCTCGCTGCGAAGTTAGTTGTCAAGGAGGCTCTGAGATCAAGGGGTCTTAAGGATGATACAACTTGCTTGGTTGTTGATATTATCCCATCAGATCATTCTATTTTACCATCAACACCTCGGAAGAAGCAAAGTATCTTCGATTCACTTATTTTTGGAAAGAAATCTCAGAATTCAGTGGCCGAACCTGGAAATAAGCTCTTTGCTGTTGGAGCTGTTGAAGAATTGTTTGAAGAGGGTTCTGCAGTGCTTGCAGAGAGGCTAGGCAAGGATAGAAACTCAGGAATTTTCAAGTGTGCGGTCTGCCAAGTGGATCAATCCCCAAATGAAGGCTTATCCGCAAACTCAGGTCCTTTCTTTTCACCATCATTGAAGCCTTGGGAAGGTCCCTTTCTATGTGCCAATTGTCGAAAGAAGAAAGATGCGATGGAAGGGAAAAAGCCAAGCGAGACGTGA | 1134 | 44.0 | MNSIEESRARSPIVPLATLIGRELRKEKIEKPVVKYGQAALARKGEDLFLIKPECQRIPGNSTTLFSVFAIFDGHNGISAAIFTKEHLLGNVLSAIPPGISREEWLQTLPRAMVAGFVKTDIEFQQKGTLKISFLLNQFIYHFLVGLHLHSCFVHHRVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSKAGGRLIIASDGIWDALSSNTAAKSCRGLPADLAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHSILPSTPRKKQSIFDSLIFGKKSQNSVAEPGNKLFAVGAVEELFEEGSAVLAERLGKDRNSGIFKCAVCQVDQSPNEGLSANSGPFFSPSLKPWEGPFLCANCRKKKDAMEGKKPSET | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 5305956 | 5308290 | - | Bda010186.1 | Bda12g00431 | 17446 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00431 | 377 | PANTHER | PROTEIN PHOSPHATASE 2C 5-RELATED | 158 | 376 | - | - | |
| Bda12g00431 | 377 | PANTHER | PROTEIN PHOSPHATASE 2C 5-RELATED | 7 | 128 | - | - | |
| Bda12g00431 | 377 | SMART | PP2C_4 | 23 | 252 | IPR001932 | - | |
| Bda12g00431 | 377 | PANTHER | ALPHABET, ISOFORM E-RELATED | 7 | 128 | - | - | |
| Bda12g00431 | 377 | Pfam | Protein phosphatase 2C | 168 | 235 | IPR001932 | - | |
| Bda12g00431 | 377 | Gene3D | - | 147 | 257 | IPR036457 | - | |
| Bda12g00431 | 377 | Gene3D | - | 37 | 139 | IPR036457 | - | |
| Bda12g00431 | 377 | ProSiteProfiles | PPM-type phosphatase domain profile. | 28 | 254 | IPR001932 | - | |
| Bda12g00431 | 377 | PANTHER | ALPHABET, ISOFORM E-RELATED | 158 | 376 | - | - | |
| Bda12g00431 | 377 | CDD | PP2Cc | 44 | 254 | IPR001932 | - | |
| Bda12g00431 | 377 | SUPERFAMILY | PP2C-like | 43 | 254 | IPR036457 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g01636 | Bda12g00431 | CCT | |
| Bda08g01091 | Bda12g00431 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01642 | Bda-Chr1:52409794 | Bda12g00431 | Bda-Chr12:5305956 | 0 | dispersed | |
| Bda07g01724 | Bda-Chr7:32271459 | Bda12g00431 | Bda-Chr12:5305956 | 5.01E-146 | dispersed | |
| Bda12g00431 | Bda-Chr12:5305956 | Bda01g00652 | Bda-Chr1:33517281 | 6.35E-13 | dispersed | |
| Bda12g00431 | Bda-Chr12:5305956 | Bda08g01091 | Bda-Chr8:24200855 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00431 | - | - | zju:107411796 | 552.362 |