Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00443 | ATGGTTTCAGAAGAAGAGCTTTTGGTACAACAAGTCTGCGAGCTGTACGACCAAATCTCAAGCCTCGAGAGCCTCAAACCAGGCAAAAATGTCGACGCACTCTTCAGCCAGCTGGTGCTGATTTGCATGCAGCCAAGCCCTCTTGACGTAGCCAAACTTTGCACGAGGGTTCAGCAAATCAGAGCCAAGCTCATTAAACTATGTGCTGAGGCTGAGGGTCTTTTAGAGAACCATTTCTCGACCATCTTAGCCTCTTTTAAAAACCCACTTCAAAATCTCAGCCTTTTCCCTTACTATTCTAACTACCTCCAACTTAGCCTTCTCGAGTTCAACATTCTCACCCATTTTTGCCAAAACCCACCTGCCAAAATAGCTTTTATTGGGTCAGGTTCACTTCCTCTCACTTCCATTGTTTTAGCCTTAAACCACCTCCCCTCCACCACTTTTCACAACTATGATATCGACCCAGTAGCCAACTCAAAGGCACTTTCTTTGATTTCATCTCATCCTGACCTGTCAAAAAGAATGTTTTTTCACACTGCAGATGTAATGAACGTCACTGCTGTTCTTAAAGAGTATCAAGTAGTGTTTTTAGCTGCTTTAGTTGGTATGAATAAGGAGGAGAAAGTTGAAGTCATAGACCATTTGTGTAAGTATATGGCTCCTGGAGCTTATCTGATGGTTAGAAGTGCTCATGGAGCAAGGGCATTTCTTTACCCAGTGGTTGATTTTTGTGATTTTCAAGGGTTTGAGATTCTGTCTGTTTTTCATCCAACTGATGAGGTTATAAATTCAGTCATTATTGCGAGGAAAGATGAGCAAGGGCAAAACTCCATTGGAATGCCTAATAAGTGCTCTGAGATGGAGATCTTCAATATTCCAAAAATGGAGGAATCAGCCATGGAAGAGCAGCTTTCTTAA | 921 | 42.24 | MVSEEELLVQQVCELYDQISSLESLKPGKNVDALFSQLVLICMQPSPLDVAKLCTRVQQIRAKLIKLCAEAEGLLENHFSTILASFKNPLQNLSLFPYYSNYLQLSLLEFNILTHFCQNPPAKIAFIGSGSLPLTSIVLALNHLPSTTFHNYDIDPVANSKALSLISSHPDLSKRMFFHTADVMNVTAVLKEYQVVFLAALVGMNKEEKVEVIDHLCKYMAPGAYLMVRSAHGARAFLYPVVDFCDFQGFEILSVFHPTDEVINSVIIARKDEQGQNSIGMPNKCSEMEIFNIPKMEESAMEEQLS | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 5441861 | 5442781 | + | Bda010199.1 | Bda12g00443 | 17458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00443 | 306 | PANTHER | NICOTIANAMINE SYNTHASE 3 | 1 | 303 | IPR004298 | GO:0030410|GO:0030418 | |
| Bda12g00443 | 306 | ProSiteProfiles | Nicotianamine synthase (NAS)-like family profile. | 1 | 276 | IPR004298 | GO:0030410|GO:0030418 | |
| Bda12g00443 | 306 | Gene3D | Vaccinia Virus protein VP39 | 7 | 272 | IPR029063 | - | |
| Bda12g00443 | 306 | PANTHER | SYNTHASE, PUTATIVE-RELATED | 1 | 303 | - | - | |
| Bda12g00443 | 306 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 80 | 232 | IPR029063 | - | |
| Bda12g00443 | 306 | Pfam | Nicotianamine synthase protein | 4 | 273 | IPR004298 | GO:0030410|GO:0030418 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g01647 | Bda12g00443 | CCT | |
| Bda07g01301 | Bda12g00443 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01647 | Bda-Chr1:52485267 | Bda12g00443 | Bda-Chr12:5441861 | 7.66E-145 | dispersed | |
| Bda01g01652 | Bda-Chr1:52568496 | Bda12g00443 | Bda-Chr12:5441861 | 8.74E-145 | dispersed | |
| Bda02g00283 | Bda-Chr2:41546197 | Bda12g00443 | Bda-Chr12:5441861 | 5.67E-95 | dispersed | |
| Bda07g01302 | Bda-Chr7:15861505 | Bda12g00443 | Bda-Chr12:5441861 | 2.67E-175 | dispersed | |
| Bda12g00443 | Bda-Chr12:5441861 | Bda07g01301 | Bda-Chr7:15857419 | 3.76E-133 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00443 | K05953 | - | tcc:18600574 | 425.246 |