Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00445 ATGAGGAAGCGTCAAGTTGTTCTTAGGAGAGAAGAAGCTTCTAGAAGCTCAACAACATCATCGTTCACGGTTAGAAACGTCAGATATGGAGAGTGCCAGAAAAACCATGCTGCCGGAGTCGGAGGATTTGCTGTCGATGGGTGCCGGGAATTCATGGCGAGCGGAGACGAAGGGTCGAGTGGTGAACTCACTTGTGCTGCCTGTGGTTGCCACAGGAATTTCCATAGAAGGGAAGTTGAGACTGAGATAGTTTGTGATTGTTCTTCACCTTCTTCCAATGGGTCATAG 288 48.61 MRKRQVVLRREEASRSSTTSSFTVRNVRYGECQKNHAAGVGGFAVDGCREFMASGDEGSSGELTCAACGCHRNFHRREVETEIVCDCSSPSSNGS 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5491818 5492105 - Bda010201.1 Bda12g00445 17460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00445 95 PANTHER MINI ZINC FINGER PROTEIN 6 93 - -
Bda12g00445 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 93 - -
Bda12g00445 95 Pfam ZF-HD protein dimerisation region 26 79 IPR006456 -
Bda12g00445 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Bda12g00445 95 MobiDBLite consensus disorder prediction 1 20 - -
Bda12g00445 95 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 79 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00445 - - - pop:7482471 161.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00445 Bda-Chr12:5491818 Bda15g00602 Bda-Chr15:9239608 7.80E-26 dispersed
Bda12g00445 Bda-Chr12:5491818 Bda06g00545 Bda-Chr6:7721829 2.29E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00445 . 1 95 Zinc finger-homeobox gene family AT3G28917 77.0 5.3e-37 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16778 PF04770 ZF-HD_dimer 5.30E-29 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00445 Bda_Chr12 FPKM 37.92453 37.815781 48.56398 49.939518 26.115568 25.014711 29.807478 15.239467 15.929846