Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00445 ATGAGGAAGCGTCAAGTTGTTCTTAGGAGAGAAGAAGCTTCTAGAAGCTCAACAACATCATCGTTCACGGTTAGAAACGTCAGATATGGAGAGTGCCAGAAAAACCATGCTGCCGGAGTCGGAGGATTTGCTGTCGATGGGTGCCGGGAATTCATGGCGAGCGGAGACGAAGGGTCGAGTGGTGAACTCACTTGTGCTGCCTGTGGTTGCCACAGGAATTTCCATAGAAGGGAAGTTGAGACTGAGATAGTTTGTGATTGTTCTTCACCTTCTTCCAATGGGTCATAG 288 48.61 MRKRQVVLRREEASRSSTTSSFTVRNVRYGECQKNHAAGVGGFAVDGCREFMASGDEGSSGELTCAACGCHRNFHRREVETEIVCDCSSPSSNGS 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5491818 5492105 - Bda010201.1 Bda12g00445 17460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00445 95 PANTHER MINI ZINC FINGER PROTEIN 6 93 - -
Bda12g00445 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 93 - -
Bda12g00445 95 Pfam ZF-HD protein dimerisation region 26 79 IPR006456 -
Bda12g00445 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Bda12g00445 95 MobiDBLite consensus disorder prediction 1 20 - -
Bda12g00445 95 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00445 Bda-Chr12:5491818 Bda15g00602 Bda-Chr15:9239608 7.80E-26 dispersed
Bda12g00445 Bda-Chr12:5491818 Bda06g00545 Bda-Chr6:7721829 2.29E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16778 PF04770 ZF-HD_dimer 5.30E-29 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00445 - - pop:7482471 161.77