Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00454 ATGGATCCCAAAGGCTCAAAGCAGCCGCAGGAAGTGGTTCCCAATTTTTTGCAAGCTCGCCCCCAATCTCAGCTAGAATCAAATATGGCTGAAAATAAATCTTCTGAAATTAAGGATTTTCAGATTGTAGTAGCAGATAAAGAGGAGGGGAAGAAGCAATTAGCTCCAAAACGAAGCTCGAATAAAGATAGGCACACCAAGGTAGATGGTAGAGGTAGAAGGATAAGGATGCCAGCTCTGTGCGCAGCGAGGATTTTCCAATTGACCAGAGAATTAGGGCATAAATCAGATGGGGAAACCATACAGTGGCTTTTGCAACAGGCGGAGCCGTCGATAATTGCGGCTACCGGGACCGGAACTATCCCGGCTTCTGCTTTAGCGGCGGCCGGAGTATCTGTATCTCAGCAAGGGACCTCTTTATCAACTGGATTGCACCAAAAGATTGAGGATGATTTCGGAGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTGGGTGGCAATTTGGGGAGACCACCACCCCATATGACTTCAGGGCTATGGCCTCCAGTCAGTAGCTTTGGGTTTCAGTCATCGTCTTCTCCGACAACAAATATGACACCCGAGAGTGCAAATTACCTCCAGAAGATCGGCTTCCCCGGATTTGACTTGCCAGTCGGGAATATCGGTCCGATGAGTTTCACCTCGATTCTGAGCAGCAATAGCCAGCAGCTGCCGGAGCTGGGGCTAGGGTTGTCGCCGGAAGGTCACATCGGAGTTTTGAATCCACAGGCTTTCAACCAGATTTATCAGCAGATGCGGCAGGCTAGAGTTCATCCGCAACATCACCAAGCTTCTCCAAAGGATGATTCTCAAGGTTCAGGCTCAGCCAACTAG 873 49.6 MDPKGSKQPQEVVPNFLQARPQSQLESNMAENKSSEIKDFQIVVADKEEGKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGVSVSQQGTSLSTGLHQKIEDDFGGSGSRTSWAMVGGNLGRPPPHMTSGLWPPVSSFGFQSSSSPTTNMTPESANYLQKIGFPGFDLPVGNIGPMSFTSILSSNSQQLPELGLGLSPEGHIGVLNPQAFNQIYQQMRQARVHPQHHQASPKDDSQGSGSAN 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5639184 5640056 - Bda010211.1 Bda12g00454 17469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00454 290 MobiDBLite consensus disorder prediction 266 290 - -
Bda12g00454 290 MobiDBLite consensus disorder prediction 11 34 - -
Bda12g00454 290 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 286 IPR005333 GO:0003700
Bda12g00454 290 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 29 286 - -
Bda12g00454 290 Pfam TCP family transcription factor 60 147 IPR017887 -
Bda12g00454 290 MobiDBLite consensus disorder prediction 48 71 - -
Bda12g00454 290 MobiDBLite consensus disorder prediction 1 34 - -
Bda12g00454 290 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00454 - - - jre:108987051 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00734 Bda-Chr3:6223483 Bda12g00454 Bda-Chr12:5639184 1.31E-34 dispersed
Bda12g00454 Bda-Chr12:5639184 Bda15g00574 Bda-Chr15:8942924 1.61E-39 dispersed
Bda13g01901 Bda-Chr13:43361036 Bda12g00454 Bda-Chr12:5639184 8.57E-122 transposed
Bda12g00454 Bda-Chr12:5639184 Bda07g01383 Bda-Chr7:16657666 2.24E-154 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00079 . 35 261 TCP Transcription Factor Family AT5G23280 53.2 1.3e-52 203.4
Bda14g00462 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda14g00488 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda15g00075 . 35 260 TCP Transcription Factor Family AT5G23280 53.0 2.3e-52 202.6
Bda14g00846 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 80.8 3.0e-40 163.3
Bda12g00454 . 1 287 TCP Transcription Factor Family AT3G27010 53.4 1.2e-66 250.4
Bda07g01383 . 7 243 TCP Transcription Factor Family AT3G27010 57.9 4.5e-58 221.9
Bda14g00462 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda14g00488 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda15g00079 . 35 259 TCP Transcription Factor Family AT5G08330 54.1 5.1e-54 208.0
Bda15g00075 . 35 258 TCP Transcription Factor Family AT5G08330 53.3 7.4e-53 204.1
Bda12g00823 BCT 18 223 TCP Transcription Factor Family AT1G53230 52.1 2.4e-45 179.9
Bda09g00513 . 18 272 TCP Transcription Factor Family AT3G15030 50.4 1.3e-55 214.2
Bda14g00885 BCT 31 173 TCP Transcription Factor Family AT5G60970 57.6 3.7e-40 162.5
Bda14g01404 . 23 209 TCP Transcription Factor Family AT2G31070 54.0 4.7e-43 172.2
Bda15g00870 . 8 192 TCP Transcription Factor Family AT2G31070 53.5 2.2e-40 163.3
Bda15g00925 . 25 208 TCP Transcription Factor Family AT2G31070 53.3 2.9e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16779 PF03634 TCP 1.60E-31 No_clan Bda TF