Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00522 ATGAATAGAATAATTTCCACGCCGGCGTCTAAGTTCCGCCATCTCCAGCGACGCATCATCAACCACACCTCCTCTGCCGCCAACGACGACGAGCATCCGCACTACCTTCTATGGCGCTACCAAATTCTCGATCCAGGCAGCGACATTGTAGCCCATTGGAACCACATTTTCCTCGTTACATGTCTCATCGCCCTCTTCATCGATCCTCTCTATTTCTATCTTCCTTCCGTTGGGGGTCCTGGCTGTCTCAAAACAGATACCAGTTTAGGAATCACCGTCACCTTCTTCCGTACGGTGACCGATCTTTTCTACCTCCTGCATATGATTATGAAATTTCGTACGGCGTTTGTGGCTCCCAGTTCTAGGGTTTTCGGAAGGGGAGAATTGGTTATGGATGCAAGAGAAATTGCAATTAGGTACTTGAAATCAGATTTTGTGATTGATCTTGCCGCAACGCTTCCTCTCCCACAAATTGTCATCTGGTTAGTGATTCCAGCAATAAGACACTCCAGAGCTGATCATGCTAACAGCACTCTATCTCTTTTTGTTCTTATACAATATGTTCCGAGGCTATTTCTCATCTTTCCTTTAAACCAGAGAATTATTAAAACTACTGGAGTTGTCACAAAAACAGCCTGGGCAGGAGCTGCATATAATCTCATTCTTTACATGCTTGCCAGCCATGTTTTAGGAGCTACATGGTATCTGCTTTCCATCGGTCGTCAATTCTCCTGCTGGAAATCGGAGTGTGCAAAGGAGAATGCTTCCAAAGTTTTGTCTTGTATCCCTAGTTTCTTAGATTGTTCTAGTTTGGAACTGCCCATAAGGCAATATTGGCTCAACGTCACTCAAGTCACTGCGAGATGTGATCCTAAGAACGAAAATATCAAATTCAAGTTTGGAATGTTTGCTGATGCCTTCACCAATGACGTTGCCACTTCACACTTTATTGAAAAGTACCTCTACAGTCTCTGGTGGGGCTTAAGGAGCTTAAGTTCGTATGGGCAAACTTTGGACACAACTACTTTCATCGGAGAGACAACATTTTGCATTTTCATATGTATTGCTGGCTTGATTCTTTTTGCACAATTGATTGGTAACATGCAGACATATTTGCAATCAATCAACGTTAGAGTTGAAGAATGGAGGGTAAAGCGAAGAGATACAGAAGAATGGATGAGACACCGTCAGTTGCCACCGGACTTGCAGGAACGTGTTCGTCGCTTTGTCCATTACAAATGGCTTGCTGCAAGAGGAGTCAATGAAGAATCTATCCTGCAATCTTTACCTCCTGATCTTCGCCGTGAGATTCAGCGCCATTTGTGCCTCTCCCTTGTTCGTCGTGTTCCTTTCTTCTCCCAAATGGATGACCAGCTCATCGACGCCATATGTGAGCGTCTCGTCTCATCTTTGAGTACCCAAGGGACCTACATCGTTCGGGAGGGTGATCCAGTAAATGAAATGCTATTCGTGATAAGAGGTCAGTTGGAGAGCTCCACCACTAATGGAGGTAGATCGGGCTTCTTCAATTCCATCACTCTAAGACCCGGCGACTTCTGTGGAGAGGAATTGCTGACTTGGGCATTAATGCCGAGTTCAAGCTTAAACCTCCCTTCTTCCACTCGCACTGTCAAAGCTCTTACTGAGGTTGAAGCTTTCACCCTCCATGCCGAAGACCTTAAATTTGTTGCAAGCCAGTTTAAGCGGCTTCACAGCAAGAAACTTCAGCATGCATTTAGATATTATTCCCATCAATGGAGGACATGGGGGGCTTGCTTTATACAGGCTGCTTGGAGGCGATTCCGGAAGAGGAAAATGGCCAAAGATCTAGCAATGCGAGAGAGCCTTTCCTACTTGCTATATAACGCGCAAACTAGTTATTACGACAATGAGGTTGGAGATGGAAGATATGAAAATGACGAAGATGATAATCTGTCAATGGATAATTCAAACAATGCACAGCATCTTGGAGCCACCATTCTTGCTTCGAAATTCGCTGCAAATACAAAAAGAGGGTCTCACCAGAAAGTGGAACCAGGCGATCCGGCTTCTTCGAGCTTGAAGATGCCCAAGTTGTTCAAGCCAGATGAACCTGATTTCTCTCTTGACCAT 2112 44.89 MNRIISTPASKFRHLQRRIINHTSSAANDDEHPHYLLWRYQILDPGSDIVAHWNHIFLVTCLIALFIDPLYFYLPSVGGPGCLKTDTSLGITVTFFRTVTDLFYLLHMIMKFRTAFVAPSSRVFGRGELVMDAREIAIRYLKSDFVIDLAATLPLPQIVIWLVIPAIRHSRADHANSTLSLFVLIQYVPRLFLIFPLNQRIIKTTGVVTKTAWAGAAYNLILYMLASHVLGATWYLLSIGRQFSCWKSECAKENASKVLSCIPSFLDCSSLELPIRQYWLNVTQVTARCDPKNENIKFKFGMFADAFTNDVATSHFIEKYLYSLWWGLRSLSSYGQTLDTTTFIGETTFCIFICIAGLILFAQLIGNMQTYLQSINVRVEEWRVKRRDTEEWMRHRQLPPDLQERVRRFVHYKWLAARGVNEESILQSLPPDLRREIQRHLCLSLVRRVPFFSQMDDQLIDAICERLVSSLSTQGTYIVREGDPVNEMLFVIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPSSSLNLPSSTRTVKALTEVEAFTLHAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRFRKRKMAKDLAMRESLSYLLYNAQTSYYDNEVGDGRYENDEDDNLSMDNSNNAQHLGATILASKFAANTKRGSHQKVEPGDPASSSLKMPKLFKPDEPDFSLDH 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7998729 8002280 - Bda033222 Bda12g00522 17537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00522 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 31 702 - -
Bda12g00522 704 MobiDBLite consensus disorder prediction 668 704 - -
Bda12g00522 704 SUPERFAMILY cAMP-binding domain-like 380 576 IPR018490 -
Bda12g00522 704 CDD CAP_ED 451 582 IPR000595 -
Bda12g00522 704 SUPERFAMILY Voltage-gated potassium channels 45 373 - -
Bda12g00522 704 Pfam Ion transport protein 53 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda12g00522 704 ProSiteProfiles cAMP/cGMP binding motif profile. 451 581 IPR000595 -
Bda12g00522 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 31 702 - -
Bda12g00522 704 Pfam Cyclic nucleotide-binding domain 474 561 IPR000595 -
Bda12g00522 704 Gene3D Helix hairpin bin 374 442 - -
Bda12g00522 704 Gene3D Jelly Rolls 449 569 IPR014710 -
Bda12g00522 704 SMART cnmp_10 451 582 IPR000595 -
Bda12g00522 704 Gene3D - 56 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00295 Bda-Chr2:42112849 Bda12g00522 Bda-Chr12:7998729 0 dispersed
Bda02g00754 Bda-Chr2:48285764 Bda12g00522 Bda-Chr12:7998729 3.49E-36 dispersed
Bda06g00780 Bda-Chr6:10863321 Bda12g00522 Bda-Chr12:7998729 2.87E-138 dispersed
Bda06g00851 Bda-Chr6:11759153 Bda12g00522 Bda-Chr12:7998729 1.00E-126 dispersed
Bda07g01333 Bda-Chr7:16097327 Bda12g00522 Bda-Chr12:7998729 4.90E-72 dispersed
Bda08g00108 Bda-Chr8:937727 Bda12g00522 Bda-Chr12:7998729 8.95E-179 dispersed
Bda11g00884 Bda-Chr11:8683641 Bda12g00522 Bda-Chr12:7998729 0 dispersed
Bda12g00522 Bda-Chr12:7998729 Bda15g00779 Bda-Chr15:11637413 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00522 K05391 - mnt:21391781 1159.82