Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00528 ATGTCAGAAAAGAGAGGGAATAGGTGGCTTTTGGAGGATGCCCGTACGAAAATGTCTTCCATTCAGCCTCTGCATCTCCAAAACTATGGCTATCTTACGTACCCTCCTCCTATTTCTCCCTCTTTTTCATCTCCATTTATCAGCAATTTCAATAAGAATTCAGCTCCACCGCCACCTCCGTCGTTGCCGTCTCCGTCTGGTAGTAGAATAAGTCCGGCTGTTCTTTTCATTATAGTTATTTTGGCTGTGCTGTTTTTCATTTCTGGTCTGCTTCACCTACTAGTTCGATTTCTCATAAAGCACCCGTCTTCCTCAGCTTCGTCTCAATCCAATAGATACCCAGAAAATTCAAGCTCGGATGCTCTTCAAAGACAATTACAGCAGCTCTTTCATCTCCACGACTCTGGATTAGATCAAGCTTTTATCGATGCTCTTCCTGTTTTCCATTACAAAGATATTGTGGGTCTGAAAGAGCCGTCTGATTGTGCTGTTTGTCTGTATGAATTTTCTGATATGGACAAACTTAGATTACTTCCCATGTGTAGCCATGCTTTTCATCTCAGTTGTATTGACACTTGGCTCTTATCAAATTCAACTTGCCCTCTTTGCAGAGGAACTGTCACGACCCGGAAGGGGGCCTAA 642 43.15 MSEKRGNRWLLEDARTKMSSIQPLHLQNYGYLTYPPPISPSFSSPFISNFNKNSAPPPPPSLPSPSGSRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASSQSNRYPENSSSDALQRQLQQLFHLHDSGLDQAFIDALPVFHYKDIVGLKEPSDCAVCLYEFSDMDKLRLLPMCSHAFHLSCIDTWLLSNSTCPLCRGTVTTRKGA 213
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 8224127 8224768 + Bda010325.1 Bda12g00528 17543
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00528 213 SMART ring_2 162 203 IPR001841 -
Bda12g00528 213 SUPERFAMILY RING/U-box 141 210 - -
Bda12g00528 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 27 209 - -
Bda12g00528 213 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 27 209 - -
Bda12g00528 213 CDD RING-H2_PA-TM-RING 161 204 - -
Bda12g00528 213 Pfam Ring finger domain 161 204 IPR001841 -
Bda12g00528 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 212 IPR013083 -
Bda12g00528 213 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00844 Bda-Chr3:7297977 Bda12g00528 Bda-Chr12:8224127 2.46E-21 transposed
Bda07g00092 Bda-Chr7:1133298 Bda12g00528 Bda-Chr12:8224127 4.75E-25 transposed
Bda11g00016 Bda-Chr11:229208 Bda12g00528 Bda-Chr12:8224127 3.05E-13 transposed
Bda11g00783 Bda-Chr11:7810461 Bda12g00528 Bda-Chr12:8224127 6.88E-24 transposed
Bda13g00463 Bda-Chr13:5592425 Bda12g00528 Bda-Chr12:8224127 1.61E-18 transposed
Bda13g00470 Bda-Chr13:5648394 Bda12g00528 Bda-Chr12:8224127 7.62E-27 transposed
Bda14g01149 Bda-Chr14:10673115 Bda12g00528 Bda-Chr12:8224127 6.66E-91 transposed
Bda15g00493 Bda-Chr15:8059195 Bda12g00528 Bda-Chr12:8224127 2.37E-21 transposed
Bda12g00528 Bda-Chr12:8224127 Bda07g01591 Bda-Chr7:29539900 6.26E-13 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00528 - - jre:108997140 274.248