Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00528 | ATGTCAGAAAAGAGAGGGAATAGGTGGCTTTTGGAGGATGCCCGTACGAAAATGTCTTCCATTCAGCCTCTGCATCTCCAAAACTATGGCTATCTTACGTACCCTCCTCCTATTTCTCCCTCTTTTTCATCTCCATTTATCAGCAATTTCAATAAGAATTCAGCTCCACCGCCACCTCCGTCGTTGCCGTCTCCGTCTGGTAGTAGAATAAGTCCGGCTGTTCTTTTCATTATAGTTATTTTGGCTGTGCTGTTTTTCATTTCTGGTCTGCTTCACCTACTAGTTCGATTTCTCATAAAGCACCCGTCTTCCTCAGCTTCGTCTCAATCCAATAGATACCCAGAAAATTCAAGCTCGGATGCTCTTCAAAGACAATTACAGCAGCTCTTTCATCTCCACGACTCTGGATTAGATCAAGCTTTTATCGATGCTCTTCCTGTTTTCCATTACAAAGATATTGTGGGTCTGAAAGAGCCGTCTGATTGTGCTGTTTGTCTGTATGAATTTTCTGATATGGACAAACTTAGATTACTTCCCATGTGTAGCCATGCTTTTCATCTCAGTTGTATTGACACTTGGCTCTTATCAAATTCAACTTGCCCTCTTTGCAGAGGAACTGTCACGACCCGGAAGGGGGCCTAA | 642 | 43.15 | MSEKRGNRWLLEDARTKMSSIQPLHLQNYGYLTYPPPISPSFSSPFISNFNKNSAPPPPPSLPSPSGSRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASSQSNRYPENSSSDALQRQLQQLFHLHDSGLDQAFIDALPVFHYKDIVGLKEPSDCAVCLYEFSDMDKLRLLPMCSHAFHLSCIDTWLLSNSTCPLCRGTVTTRKGA | 213 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 8224127 | 8224768 | + | Bda010325.1 | Bda12g00528 | 17543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00528 | 213 | SMART | ring_2 | 162 | 203 | IPR001841 | - | |
| Bda12g00528 | 213 | SUPERFAMILY | RING/U-box | 141 | 210 | - | - | |
| Bda12g00528 | 213 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE | 27 | 209 | - | - | |
| Bda12g00528 | 213 | PANTHER | RING-H2 FINGER PROTEIN ATL46-LIKE | 27 | 209 | - | - | |
| Bda12g00528 | 213 | CDD | RING-H2_PA-TM-RING | 161 | 204 | - | - | |
| Bda12g00528 | 213 | Pfam | Ring finger domain | 161 | 204 | IPR001841 | - | |
| Bda12g00528 | 213 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 212 | IPR013083 | - | |
| Bda12g00528 | 213 | ProSiteProfiles | Zinc finger RING-type profile. | 162 | 204 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00844 | Bda-Chr3:7297977 | Bda12g00528 | Bda-Chr12:8224127 | 2.46E-21 | transposed | |
| Bda07g00092 | Bda-Chr7:1133298 | Bda12g00528 | Bda-Chr12:8224127 | 4.75E-25 | transposed | |
| Bda11g00016 | Bda-Chr11:229208 | Bda12g00528 | Bda-Chr12:8224127 | 3.05E-13 | transposed | |
| Bda11g00783 | Bda-Chr11:7810461 | Bda12g00528 | Bda-Chr12:8224127 | 6.88E-24 | transposed | |
| Bda13g00463 | Bda-Chr13:5592425 | Bda12g00528 | Bda-Chr12:8224127 | 1.61E-18 | transposed | |
| Bda13g00470 | Bda-Chr13:5648394 | Bda12g00528 | Bda-Chr12:8224127 | 7.62E-27 | transposed | |
| Bda14g01149 | Bda-Chr14:10673115 | Bda12g00528 | Bda-Chr12:8224127 | 6.66E-91 | transposed | |
| Bda15g00493 | Bda-Chr15:8059195 | Bda12g00528 | Bda-Chr12:8224127 | 2.37E-21 | transposed | |
| Bda12g00528 | Bda-Chr12:8224127 | Bda07g01591 | Bda-Chr7:29539900 | 6.26E-13 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00528 | - | - | jre:108997140 | 274.248 |