Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00539 ATGGATAACCCGCTTCCCAAAACCCCCGATTCCTCTGATTTTCACTCTTTTAACACCCTTAGCGTTAGCATCTGCAGCACCATTATTTCGGGCTCGGATTATTCTGCCCCAAATGCGAGTTTCAGCAGCAACATGAGCAACCTCACTGTTGAATCTCCGACAAACGATAAAGCCGTTTCAGATTGTGAAGAAGGCGAATCAAATTGTTTTGACGATAAAAAATTCAATTCTAGGAGCTCTTATCCGTCCAAGCCCCACAGAGGCAACGATATTCGATGGGAGGCGATTCGACGGACGAAAGTAAAAGATGGAGATTTAAACTTCGGCCATTTCAGGCTTTTGAAGAAGCTTGGATTTGGAGACATTGGAAGTGTGTATCTGGCAGAACTGAGAGGAATACGCTGCCTTTTTGCCATGAAGGTTATGGACAAAAGAATGCTGATTGAGAGGAGGAAGATGGGTAGAGCACAAACTGAGAGAGACATACTCGGTTTGCTAGATCATCCTTTTCTACCAACCCTTTACTCCCATTTCGAAACCGACAAATTTTCTTGCTTGTTAATGGAGTTTTGCAGTGGTGGGGATCTTCACACGCTCAGGCAACGCCAGCCTTCCAAGCATTTTTCAGAGCAAGCAGCCAGGTTTTACGCCTCGGAAGTTCTTCTTGCTCTGGAGTATCTTCACATGATGGGAGTTGTTTACAGAGACTTGAAACCAGAAAACGTGTTAGTCAGAGAAGATGGTCACATCATGCTTTCAGATTTTGATTTATCATTGCAATGCTACGTTAATCCAACTCTCGTTCAATCCAATCCAGCCTCCGCTTGCGCAATTTCTGCAGCCTGCAAATTACCCATTTGCGTCCACCAATCTTCCTGCCTGCAACCTTCTTGCTTGAAGCCTATCACATTTCTCAAATCAAACAAGATAAAACGTGATCATAAAATGATCAGCTTTTCACATTCAGACTCGCTCCCCCAACTCATAGCCGAGCCTACTTCAGCTAGATCAACGTCTTTTGTCGGAACCCACGAGTACTTGGCTCCGGAGATTATCCGAGGAGACGGCCATGGCAGCGCAGTAGATTGGTGGACGTTTGGGATCTTCTTGTACGAATTATTACATGGCAAAACCCCATTCAAAGGGAATGGAAATAGAGAAACCTTGTTCAACGTGATTGGGCAGTCTCTCAAATTCCCAGAAGGGAACAGTATAAGCTATGCTGCTAAAGATTTGATCAGAACTTTGCTGGAGAAGGAACCTCAAAAGCGGCTGGGATTCAAAAGCGGCGCGGCGGAGATAAAACAGCATCCATTTTTTCACGGAGTGAACTGGGCTCTCATTCGCAGTTCTTCCCCTCCTGAAATTCCGAGACCAGTTCATCTTCCCTTGTTGAACCTCAAGCTGAAATCTCCTTCCCCTCTTCCGTCCAACGACAGCAAGGGAGCATCCGATTCAGACAGCTCCTCCTCGGGTTCTTACTTAGAATTTGAGTTTTTCTAG 1503 45.44 MDNPLPKTPDSSDFHSFNTLSVSICSTIISGSDYSAPNASFSSNMSNLTVESPTNDKAVSDCEEGESNCFDDKKFNSRSSYPSKPHRGNDIRWEAIRRTKVKDGDLNFGHFRLLKKLGFGDIGSVYLAELRGIRCLFAMKVMDKRMLIERRKMGRAQTERDILGLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPSKHFSEQAARFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLQCYVNPTLVQSNPASACAISAACKLPICVHQSSCLQPSCLKPITFLKSNKIKRDHKMISFSHSDSLPQLIAEPTSARSTSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLHGKTPFKGNGNRETLFNVIGQSLKFPEGNSISYAAKDLIRTLLEKEPQKRLGFKSGAAEIKQHPFFHGVNWALIRSSSPPEIPRPVHLPLLNLKLKSPSPLPSNDSKGASDSDSSSSGSYLEFEFF 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8548503 8550086 + Bda010339.1 Bda12g00539 17554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00539 500 PANTHER FLIPPASE KINASE 1-RELATED 18 500 - -
Bda12g00539 500 MobiDBLite consensus disorder prediction 471 500 - -
Bda12g00539 500 Gene3D Phosphorylase Kinase; domain 1 110 190 - -
Bda12g00539 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Bda12g00539 500 CDD STKc_phototropin_like 110 459 - -
Bda12g00539 500 SMART serkin_6 111 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00539 500 ProSiteProfiles Protein kinase domain profile. 111 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00539 500 Gene3D Transferase(Phosphotransferase) domain 1 191 260 - -
Bda12g00539 500 Gene3D Transferase(Phosphotransferase) domain 1 334 457 - -
Bda12g00539 500 Pfam Protein kinase domain 112 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00539 500 Pfam Protein kinase domain 330 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00539 500 SUPERFAMILY Protein kinase-like (PK-like) 82 469 IPR011009 -
Bda12g00539 500 PANTHER PROTEIN KINASE 18 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00539 Bda-Chr12:8548503 Bda13g00144 Bda-Chr13:1914433 0 dispersed
Bda12g00539 Bda-Chr12:8548503 Bda11g00409 Bda-Chr11:4409250 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69966 PF00069 Pkinase 4.70E-37 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00539 K08286 - qsu:112027816 656.366