Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00544 ATGAAGATCTACTCCTACTTCTTCGTCTGCTCCGCTTTATTTCTTCTGTATTTCGCTTCTTCTTGTACAGGGGCAGATGAGGACGACGCGAGGTGCCTTCAGGGGATTAAGAATTCGCTCAACGATCCTCAGGGGATTCTTAGCTCATGGAACTTCGCCAACACTACTGTTGGTTTCGTCTGCAATTTCGTCGGGGTTACCTGCTGGAACGATCTTGAGAATCGTGTAATTACTCTGGAACTGCGGGGAATGAAGCTGTCTGGCTTGATTCCGACGGATTTTCAGTATTGTACAAACCTGCAAAACTTGTATCTTTCCGATAACGATTTCTCAGGCTCGATTCCATCTGAGATTTGCTCGTGGTTGATGTTCTTGGTGACTCTGGATTTGTCCAACAATGGTTTTTCAGGCTCAATACCTCCCGATCTAGCCAAGTGTTCCTATTTGAACAAGTTGATTTTGTCGGGTAATCGTCTGTCGGGCTCAATTCCTTATGAACTTTCTAGTCTGAGTCGGCTTAATAAGTTTTCTGTGGCGAATAACGAACTTAGTGGAGCTATTCCTTCGTTTTTCTCCAAGTTTGGGAAGGCTGATTTTGAAGGGAATAGCGGCCTTTGTGGGCAGCCTCTTGGATCGAAGTGTGGTGGTGCCATTTGA 657 45.51 MKIYSYFFVCSALFLLYFASSCTGADEDDARCLQGIKNSLNDPQGILSSWNFANTTVGFVCNFVGVTCWNDLENRVITLELRGMKLSGLIPTDFQYCTNLQNLYLSDNDFSGSIPSEICSWLMFLVTLDLSNNGFSGSIPPDLAKCSYLNKLILSGNRLSGSIPYELSSLSRLNKFSVANNELSGAIPSFFSKFGKADFEGNSGLCGQPLGSKCGGAI 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8697825 8698481 + Bda010346.1 Bda12g00544 17559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00544 218 PANTHER - 13 215 - -
Bda12g00544 218 PANTHER OS07G0107800 PROTEIN-RELATED 13 215 - -
Bda12g00544 218 Pfam Leucine Rich Repeat 125 146 IPR001611 GO:0005515
Bda12g00544 218 Pfam Leucine Rich Repeat 99 119 IPR001611 GO:0005515
Bda12g00544 218 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Bda12g00544 218 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Bda12g00544 218 Gene3D Ribonuclease Inhibitor 26 216 IPR032675 -
Bda12g00544 218 SUPERFAMILY L domain-like 26 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00544 Bda-Chr12:8697825 Bda14g01141 Bda-Chr14:10578947 1.31E-119 dispersed
Bda12g00542 Bda-Chr12:8656617 Bda12g00544 Bda-Chr12:8697825 1.41E-146 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00544 - - rcu:8280612 292.737