Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00560 ATGAGAATCAACGTGAAGAAATCGACAATGGTGAGCCCATCAACAGAAACGCCCCAGGAAACCCTGTGGAACTCAAATGTAGACCTTGTGGTGCCAAGCATGCACACCCCAAGCGTCTACTTCTACAGGCCTACCGGAGCCTCCAACTTCTTCGACGCGCAGGTCCTGAAGGAGGCCCTTAGCAAGGCCTTGGTCCCCTTCTACCCCATGGCCGGGCGGCTGAAGAGGGACGAAGATGGTCGAATCGAGATCGACTGCAGAGGGCAGGGCGTGCTCTTTGTTGAGGCTGATACTGGCTCAGTTGTTGATGATTTTGGCGACTTTGCTCCCACTTTGAAGCTTCGTCAGCTCATTCCAACTGTTGATTATTCCGGTGGAATAGAGTCTTATCCTCTTCTGGTCTTGCAGGTCACTCACTTCAAGTGTGGAGGAGTTTCACTTGGTGTTGGTATGCAACATCACGTTGCTGACGGGTTTTCCGGCCTCCACTTTGTGAACACATGGTCCGATATGGCTCGTGGTCTTGACCTTTCGATTCTGCCTTTTATCGACCGGAGTCTACTCGAGGCTCAGGACCCACCAAGACCTGCATTTCAACACGTTGAATACCAGCCCCCTCCTTCGATGAAAACACTCTTGCCTGCCGGTGAATTAGGCTCCGATGCAGTTGCTGTTTCGATTTTCAAAATATCCCGAGATCAGCTCAACAAACTGAAGGCAAAATCGAAAGAAAATGGTAACAAGATCAACTATAGTTCGTATGAGATGTTATCGGGCCATGTGTGGAGAAGCGTTTGCCTGTCGCGCGGACTCCCAGACGACCAGGAAACAAAGCTGTACATTGCGACAGATGGGCGCTTCAGATTGCGTCCTCATCTTCCTCTGGGGTACTTTGGCAATGTGATATTCACTGCTACACCAATTGCAATGGCTGGTGATCTCCAATCGAAACCGACGTGGTATGCTGCAAGTCGGATCCATGACACCTTGGTGAAAATGGACAATGATTATTTAAGATCAGCCCTTGATTATCTTGAGCTGCAACCCGATTTGTCAGCTCTCGTGCGCGGAGCCCACACATTTAGGTGTCCTAATCTGGGAATCACCAGTTGGGTCAGGCTGCCGATCCACGATGCTGATTTCGGGTGGGGGCGGCCTATTTTCATGGGGCCCGGCGGAATCGCGTACGAAGGTCTGGCGTTTATGATACCGAGTCCTACAGACGACGGGAGTTTGTCGGTGGCGATCGCATTGCAGTCTCAACACATGAAAGTGTTTGAAAAAGTGTTGTATGAAATTTGA 1302 50.54 MRINVKKSTMVSPSTETPQETLWNSNVDLVVPSMHTPSVYFYRPTGASNFFDAQVLKEALSKALVPFYPMAGRLKRDEDGRIEIDCRGQGVLFVEADTGSVVDDFGDFAPTLKLRQLIPTVDYSGGIESYPLLVLQVTHFKCGGVSLGVGMQHHVADGFSGLHFVNTWSDMARGLDLSILPFIDRSLLEAQDPPRPAFQHVEYQPPPSMKTLLPAGELGSDAVAVSIFKISRDQLNKLKAKSKENGNKINYSSYEMLSGHVWRSVCLSRGLPDDQETKLYIATDGRFRLRPHLPLGYFGNVIFTATPIAMAGDLQSKPTWYAASRIHDTLVKMDNDYLRSALDYLELQPDLSALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLAFMIPSPTDDGSLSVAIALQSQHMKVFEKVLYEI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9414922 9416932 + Bda010381.1 Bda12g00560 17575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00560 433 Gene3D - 1 205 IPR023213 -
Bda12g00560 433 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 432 - -
Bda12g00560 433 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 432 - -
Bda12g00560 433 Gene3D - 217 433 IPR023213 -
Bda12g00560 433 Pfam Transferase family 2 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01139 Bda-Chr3:12011939 Bda12g00560 Bda-Chr12:9414922 2.23E-12 dispersed
Bda10g00918 Bda-Chr10:43567099 Bda12g00560 Bda-Chr12:9414922 7.43E-34 dispersed
Bda11g00708 Bda-Chr11:7055390 Bda12g00560 Bda-Chr12:9414922 1.14E-105 dispersed
Bda11g00803 Bda-Chr11:7970418 Bda12g00560 Bda-Chr12:9414922 8.29E-18 dispersed
Bda12g00560 Bda-Chr12:9414922 Bda15g00682 Bda-Chr15:10246878 9.84E-79 dispersed
Bda12g00560 Bda-Chr12:9414922 Bda07g01381 Bda-Chr7:16641520 1.95E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00560 K13065 - pop:7478310 743.036