Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00562 ATGGCGGATCTCAAAGAACGATTGCTTCCTCCTAGACCTGCATCTGCCATTATCCTTAGGGAGTCATCTTATCGGCCATCAGCCACTGGAAGACAGCCTTTTCAAGGCATGGATGTTCCGGGATTGAAGAAACGAGGCCCAGGGCTTAGATCTTGGATCCGGGTTGACCTTTCTGGGAACTCTCAAATCATTGAGGTCGATAAGTTCACCATGATGCGACGTTGTGATCTTCCTGCTCGTGATCTTCGTCTGCTTGATCCTCTTTTCGTTTATCCATCTACAATACTTGGTAGAGAGAAGGCTATTGTCGTTAATTTGGAGCAAATTCGATGCATTATCACTGCAGATGAGGTTCTGTTATTGAATTCACTTGATAGTTATGTTCTGCAATATGTAGTAGAACTCCAACGCCGACTAACAGGTAATGGGACTGGGGAGGTTTGGCAATCTCAAAGTCTAGACTTGAACTGGAGGAGTGGAGATAGACACTTGGAGAATGCGTTTGGTAGCACATCACCTGATTATTTACCCTTTGAGTTTAGGGCTCTAGAAGTTGCTCTTGAAGCTGCTTGTACGTTTCTCGATTCTCAGGCAGCAGAATTAGAAATAGAAGCATATCCACTGTTAGATGAACTGACATCAAAGATCAGTACATTAAATCTGGAACGTGCACGACGACTGAAAAGCAGACTCGTTGCCTTGACTCGCAGAGTTCAGAAGGTTAGGGATGAAATAGAGCAACTCATGGATGATGATGGTGACATGGCTGAAATGTATCTCACAGAGAAGAAAAGGCGGATGGAGGCTTCCTTTTATGGCGATCAGTCTTTGATGACATACAGATCAAACGAAGGAGCCTCAGCCTCTGCTCCGGTTTCACCTGTATCCTCCCCTCCTGAAGCACGAAAGCTCGAGAAAAGCTTGAGTATTGCTAGAAGTCGACATGAGAGCATGAGGAGTTCAGAAAGTGCTACCAACAGTATAGAAGAGCTCGAGATGTTGCTTGAAGCGTATTTTGTTGTCATTGATAGCACCTTAAATAAGTTGACATCATTGAAAGAGTACATCGACGACACGGAAGATTTCATCAACATTCAGCTGGATAATGTGAGAAATCAGCTGATCCAATTTGAGCTACTGCTCACAACGGCAACATTCGTGGTAGCAATCTTCGGAGTGGTTGCCGGAATCTTCGGTATGAACTTTTCAATACCACTTTTCGACGATGAAGGTGCGTTTAAGTGGGTTCTTGTAATCACAGGAGTAAGTGGTGTATTCATTTTTCTTGGATTCCTTTGGTTTTTCAAATATAGAAGACTCATGCCATTGTAG 1332 43.77 MADLKERLLPPRPASAIILRESSYRPSATGRQPFQGMDVPGLKKRGPGLRSWIRVDLSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTGNGTGEVWQSQSLDLNWRSGDRHLENAFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERARRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMEASFYGDQSLMTYRSNEGASASAPVSPVSSPPEARKLEKSLSIARSRHESMRSSESATNSIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFSIPLFDDEGAFKWVLVITGVSGVFIFLGFLWFFKYRRLMPL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9654647 9657186 + Bda010389.1 Bda12g00562 17577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00562 443 Gene3D - 42 123 - -
Bda12g00562 443 Pfam CorA-like Mg2+ transporter protein 333 430 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bda12g00562 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 380 433 IPR045863 -
Bda12g00562 443 CDD Mrs2_Mfm1p-like 52 440 IPR039204 -
Bda12g00562 443 MobiDBLite consensus disorder prediction 305 319 - -
Bda12g00562 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Bda12g00562 443 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 443 - -
Bda12g00562 443 Gene3D Magnesium transport protein CorA, transmembrane region 152 374 - -
Bda12g00562 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 443 IPR039204 -
Bda12g00562 443 Coils Coil 224 251 - -
Bda12g00562 443 MobiDBLite consensus disorder prediction 283 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01174 Bda-Chr6:41159073 Bda12g00562 Bda-Chr12:9654647 1.18E-114 dispersed
Bda06g01175 Bda-Chr6:41170785 Bda12g00562 Bda-Chr12:9654647 8.10E-109 dispersed
Bda08g00266 Bda-Chr8:2739618 Bda12g00562 Bda-Chr12:9654647 3.11E-100 transposed
Bda09g00228 Bda-Chr9:3077204 Bda12g00562 Bda-Chr12:9654647 1.45E-18 transposed
Bda11g01176 Bda-Chr11:12156585 Bda12g00562 Bda-Chr12:9654647 4.10E-158 transposed
Bda12g00562 Bda-Chr12:9654647 Bda05g00496 Bda-Chr5:51751997 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00562 K16075 - zju:107406935 749.584