Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00568 ATGTTGGAAAATTACAATGCATTGAGAAGCCATTTGATGGATTGTATCAACAAAAACTCAGACAAGGAACTCAGCCCGGTGAAGAAAAGAAAATCAGAAAGCAGTAACAACAACATCAGCAATACCCTAGGAGCTGACGCAAATTCCGACACAAGCTCATGCGAGGAGGGTTCGTGCAAGAAACCAAGAGAAGAAACGATCAAATCCAAAATTACGAAAACTTATTACAAGACCGAACCTTCTGATACAAGCCTCGTTGTGAAAGATGGGTATCAATGGAGGAAATATGGGCAAAAAGTGACCAGGGATAATCCTTGTCCTAGAGCTTATTTTAGATGCTCTTTCGCTCCTACATGTCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGAAGATCAGTCTGTTTTGGTTGCAACTTACGAAGGAGAACATAACCATCCGAACTCCGGCCAGGAGGTAAACTCAGCCTCAACTCGACGAGCCACTGCTGGTATCTGGTGGAGCAGATGGCATCTTCTCTGA 519 43.55 MLENYNALRSHLMDCINKNSDKELSPVKKRKSESSNNNISNTLGADANSDTSSCEEGSCKKPREETIKSKITKTYYKTEPSDTSLVVKDGYQWRKYGQKVTRDNPCPRAYFRCSFAPTCPVKKKVQRSVEDQSVLVATYEGEHNHPNSGQEVNSASTRRATAGIWWSRWHLL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9895955 9896838 - Bda010396.1 Bda12g00568 17583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00568 172 MobiDBLite consensus disorder prediction 31 55 - -
Bda12g00568 172 MobiDBLite consensus disorder prediction 23 59 - -
Bda12g00568 172 Pfam WRKY DNA -binding domain 88 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00568 172 Gene3D WRKY domain 71 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00568 172 SMART WRKY_cls 87 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00568 172 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 159 IPR044810 GO:0003700
Bda12g00568 172 ProSiteProfiles WRKY domain profile. 82 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00568 172 SUPERFAMILY WRKY DNA-binding domain 84 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00568 172 PANTHER TRANSCRIPTION FACTOR 3 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00568 Bda-Chr12:9895955 Bda05g00712 Bda-Chr5:55382542 8.71E-28 dispersed
Bda12g00568 Bda-Chr12:9895955 Bda04g00793 Bda-Chr4:57824886 7.46E-60 wgd
Bda12g00568 Bda-Chr12:9895955 Bda05g00494 Bda-Chr5:51733979 4.62E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16784 PF03106 WRKY 9.90E-24 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00568 - - qsu:111983152 236.498