Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00572 ATGGATAGTGAAAAAGTTGTCTCCACAAGTCCAATACCGGCAACTCCAGGAATTTGTGGTGCTTCTCTCTTTGATGGGTTAGTGAAAGATCATAGAGGTGGGAATGGTAGAGGATCCATTTTCAAGAGCTGTAAGTGCTTCAGTGTTGAAGAAGAGCTCAAAGAAGAAGGAAGTCTTCATTATGCATCTTGCTCATTGCCATCTCCTCCTGTCTCACTGGCTAAAAAGGTTGGAGCGGAGTTTATAGGCACTCTTATGCTCATCTTTGCTGCGACAGCCACTGCCATTGTGAACAAAAAGACAAATGGCAGTGAGACACTCATCGGCCTTGCCTCCTCGGCAGGTCTGGCTGCTATGGTTGTCATTTTATCCACTGGACACATATCAGGAGCTCATCTAAACCCAGCAATCACCATTTCCTTTGCTGCCTTAAAGCATTTTCCATGGAAACATGTTCCAGCATATATTGGTGCACAGGTGGTTGCATCTTTGTGCGCTGCATATGCCTTGGATGCAATTTTTCACCCTATTATGGGCGGGGGAGTTACTGTTCCTTCAGGAGGATGTGACCAAGCTTTTGCTCTGGAATTTATCATCAGCTTTAACCTCATGTTTGTGACAACTGCAGTTGCCACTGACACAAAAGCTGTAGGAGAGCTAGCGGGAATTACTGTCGGAGCTACTGTCATGCTCAATGTACTCATTGCTGGGGAAACAACAGGAGCGTCAATGAACCCAGTGAGAACTCTAGGACCAGCCATAGCTGCACACAACTTCAAAGACATATGGGTTTACCTCACTGCTCCTATCCTTGGGGCATTATGTGGTGCTGGAACTTATTGCGCTGTCAAGATGCCGGAAAAATAA 867 45.91 MDSEKVVSTSPIPATPGICGASLFDGLVKDHRGGNGRGSIFKSCKCFSVEEELKEEGSLHYASCSLPSPPVSLAKKVGAEFIGTLMLIFAATATAIVNKKTNGSETLIGLASSAGLAAMVVILSTGHISGAHLNPAITISFAALKHFPWKHVPAYIGAQVVASLCAAYALDAIFHPIMGGGVTVPSGGCDQAFALEFIISFNLMFVTTAVATDTKAVGELAGITVGATVMLNVLIAGETTGASMNPVRTLGPAIAAHNFKDIWVYLTAPILGALCGAGTYCAVKMPEK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11762990 11764635 + Bda010416.1 Bda12g00572 17587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00572 288 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda12g00572 288 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda12g00572 288 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda12g00572 288 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda12g00572 288 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda12g00572 288 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda12g00572 288 PANTHER AQUAPORIN NIP2-1 5 287 IPR034294 -
Bda12g00572 288 SUPERFAMILY Aquaporin-like 72 286 IPR023271 -
Bda12g00572 288 Pfam Major intrinsic protein 72 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda12g00572 288 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Bda12g00572 288 Gene3D Glycerol uptake facilitator protein. 49 288 IPR023271 -
Bda12g00572 288 PANTHER BNAA02G36290D PROTEIN 5 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00175 Bda-Chr7:2155047 Bda12g00572 Bda-Chr12:11762990 9.93E-116 dispersed
Bda09g00618 Bda-Chr9:8973448 Bda12g00572 Bda-Chr12:11762990 1.47E-116 dispersed
Bda09g00826 Bda-Chr9:17878049 Bda12g00572 Bda-Chr12:11762990 2.65E-70 dispersed
Bda09g00827 Bda-Chr9:18008587 Bda12g00572 Bda-Chr12:11762990 1.84E-59 dispersed
Bda12g00572 Bda-Chr12:11762990 Bda05g00491 Bda-Chr5:51712760 7.21E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00572 K09874 - cit:102629705 434.106