Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00577 ATGGGTAGACCCCAGCACCGTTATCGAGGAGTTCGCCAACGCCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTCTGAAGACGAGGATATGGCTTGGTACGTTTGAAACTGCTGAGGATGCAGCAAGAGCATATGATGAAGCCGCAAGGCTTATGTGCTGCCCAATGACCGGTACGAATTTCTCTCATAATCATCCACCTGATTCTCTCTCTTCTCCCACGCTTCTATCTCCTGCACTAATAAGCAAGCTTCAAAAATGTCACGTTGCCTCCCTCCAAATGACCAAAAAAATTACCCCAAAGCATCCTCAGGAACTTGAACACATCCGGCGGTCTCCTTCGACTGTCACCGGAAAATGTCCAGCCATATTTTCCGGACAGGCAGAGATGGATGTAAGTTGGAACGGGGAGTTGGGTCAGGAACAAAGTGGACAACCATTTGAATCTCTTGAAGATGACCAAGTAGAGCAGATGATTGAAGAGCTGCTTCACCTTGGGTCTATTGAGCTTTGCGACCCTAACACCGCTACTAATTGA 543 48.43 MGRPQHRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCCPMTGTNFSHNHPPDSLSSPTLLSPALISKLQKCHVASLQMTKKITPKHPQELEHIRRSPSTVTGKCPAIFSGQAEMDVSWNGELGQEQSGQPFESLEDDQVEQMIEELLHLGSIELCDPNTATN 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12270133 12270863 + Bda010428.1 Bda12g00577 17592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00577 180 Pfam AP2 domain 7 52 IPR001471 GO:0003700|GO:0006355
Bda12g00577 180 PANTHER ETHYLENE RESPONSE FACTOR 1 174 - -
Bda12g00577 180 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Bda12g00577 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bda12g00577 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bda12g00577 180 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bda12g00577 180 CDD AP2 7 63 IPR001471 GO:0003700|GO:0006355
Bda12g00577 180 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Bda12g00577 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 174 - -
Bda12g00577 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00577 Bda-Chr12:12270133 Bda13g01247 Bda-Chr13:34905529 9.46E-56 dispersed
Bda12g00577 Bda-Chr12:12270133 Bda02g00187 Bda-Chr2:36024788 5.39E-30 wgd
Bda12g00577 Bda-Chr12:12270133 Bda04g00804 Bda-Chr4:57888195 1.54E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16786 PF00847 AP2 2.50E-11 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00577 - - csin:114287804 186.037