Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda12g00577 | ATGGGTAGACCCCAGCACCGTTATCGAGGAGTTCGCCAACGCCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTCTGAAGACGAGGATATGGCTTGGTACGTTTGAAACTGCTGAGGATGCAGCAAGAGCATATGATGAAGCCGCAAGGCTTATGTGCTGCCCAATGACCGGTACGAATTTCTCTCATAATCATCCACCTGATTCTCTCTCTTCTCCCACGCTTCTATCTCCTGCACTAATAAGCAAGCTTCAAAAATGTCACGTTGCCTCCCTCCAAATGACCAAAAAAATTACCCCAAAGCATCCTCAGGAACTTGAACACATCCGGCGGTCTCCTTCGACTGTCACCGGAAAATGTCCAGCCATATTTTCCGGACAGGCAGAGATGGATGTAAGTTGGAACGGGGAGTTGGGTCAGGAACAAAGTGGACAACCATTTGAATCTCTTGAAGATGACCAAGTAGAGCAGATGATTGAAGAGCTGCTTCACCTTGGGTCTATTGAGCTTTGCGACCCTAACACCGCTACTAATTGA | 543 | 48.43 | MGRPQHRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCCPMTGTNFSHNHPPDSLSSPTLLSPALISKLQKCHVASLQMTKKITPKHPQELEHIRRSPSTVTGKCPAIFSGQAEMDVSWNGELGQEQSGQPFESLEDDQVEQMIEELLHLGSIELCDPNTATN | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 12270133 | 12270863 | + | Bda010428.1 | Bda12g00577 | 17592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda12g00577 | 180 | Pfam | AP2 domain | 7 | 52 | IPR001471 | GO:0003700|GO:0006355 | |
Bda12g00577 | 180 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 174 | - | - | |
Bda12g00577 | 180 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Bda12g00577 | 180 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Bda12g00577 | 180 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Bda12g00577 | 180 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Bda12g00577 | 180 | CDD | AP2 | 7 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Bda12g00577 | 180 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677 | |
Bda12g00577 | 180 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 174 | - | - | |
Bda12g00577 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda12g00577 | Bda-Chr12:12270133 | Bda13g01247 | Bda-Chr13:34905529 | 9.46E-56 | dispersed | |
Bda12g00577 | Bda-Chr12:12270133 | Bda02g00187 | Bda-Chr2:36024788 | 5.39E-30 | wgd | |
Bda12g00577 | Bda-Chr12:12270133 | Bda04g00804 | Bda-Chr4:57888195 | 1.54E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16786 | PF00847 | AP2 | 2.50E-11 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda12g00577 | - | - | csin:114287804 | 186.037 |