Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00590 | ATGGGATTATCCCAAGCTTTCTTGCTTTCTCTATTTCTTTCTTTAAATTGCTTCAGCGGAAGCAGCACGGAATTTGAAGTGGGTGATGAAGATGGGTGGGTCGTTCCTCAAGCAAAGAGTGACAGCCAAAAGTACAACCAGTGGGCCTCCAGAAACAGGTTCAAGTTTAACGACACAGTTCACTTCAAGTACAAGAAAGACTCAGTTTTGGTGGTGACAGAGGACGAATATGACCGGTGTCATTCTTCTCACCCAACCTTCTTCTCCAACAATGGCGACTCAGTGTTCAAACTGGACAGACCAGGGCTCTTCTTCTTCATCAGCGGAGTTTTCGGCCACTGCGAGAGGGGTCAGAAGATGATCATCAAAGTGCTGAATGTAGCCGCAGCTTCTCCCGTCCCAGCCAATCAAACGGTCGCCGCTGCTCCTTCCATTTCTGCCCCCATCATTCTTCTGCTGGCTTTCCCATTTGCTGGGATGTTATTCGCCTGA | 492 | 48.58 | MGLSQAFLLSLFLSLNCFSGSSTEFEVGDEDGWVVPQAKSDSQKYNQWASRNRFKFNDTVHFKYKKDSVLVVTEDEYDRCHSSHPTFFSNNGDSVFKLDRPGLFFFISGVFGHCERGQKMIIKVLNVAAASPVPANQTVAAAPSISAPIILLLAFPFAGMLFA | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 15613676 | 15614248 | - | Bda010465.1 | Bda12g00590 | 17605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00590 | 163 | PANTHER | BLUE COPPER PROTEIN | 9 | 151 | IPR039391 | GO:0009055 | |
| Bda12g00590 | 163 | Gene3D | - | 22 | 130 | IPR008972 | - | |
| Bda12g00590 | 163 | ProSiteProfiles | Phytocyanin domain profile. | 23 | 126 | IPR003245 | GO:0009055 | |
| Bda12g00590 | 163 | CDD | OsENODL1_like | 23 | 125 | IPR041846 | - | |
| Bda12g00590 | 163 | PANTHER | EARLY NODULIN-LIKE PROTEIN 6 | 9 | 151 | - | - | |
| Bda12g00590 | 163 | SUPERFAMILY | Cupredoxins | 22 | 125 | IPR008972 | - | |
| Bda12g00590 | 163 | Pfam | Plastocyanin-like domain | 38 | 118 | IPR003245 | GO:0009055 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda04g00879 | Bda12g00590 | CCT | |
| Bda10g00828 | Bda12g00590 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda09g00860 | Bda-Chr9:21054413 | Bda12g00590 | Bda-Chr12:15613676 | 1.15E-117 | dispersed | |
| Bda12g00590 | Bda-Chr12:15613676 | Bda13g01640 | Bda-Chr13:39873479 | 4.48E-42 | dispersed | |
| Bda12g00590 | Bda-Chr12:15613676 | Bda14g00907 | Bda-Chr14:7041790 | 3.04E-73 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00590 | - | - | jre:109003316 | 186.808 |