Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00590 ATGGGATTATCCCAAGCTTTCTTGCTTTCTCTATTTCTTTCTTTAAATTGCTTCAGCGGAAGCAGCACGGAATTTGAAGTGGGTGATGAAGATGGGTGGGTCGTTCCTCAAGCAAAGAGTGACAGCCAAAAGTACAACCAGTGGGCCTCCAGAAACAGGTTCAAGTTTAACGACACAGTTCACTTCAAGTACAAGAAAGACTCAGTTTTGGTGGTGACAGAGGACGAATATGACCGGTGTCATTCTTCTCACCCAACCTTCTTCTCCAACAATGGCGACTCAGTGTTCAAACTGGACAGACCAGGGCTCTTCTTCTTCATCAGCGGAGTTTTCGGCCACTGCGAGAGGGGTCAGAAGATGATCATCAAAGTGCTGAATGTAGCCGCAGCTTCTCCCGTCCCAGCCAATCAAACGGTCGCCGCTGCTCCTTCCATTTCTGCCCCCATCATTCTTCTGCTGGCTTTCCCATTTGCTGGGATGTTATTCGCCTGA 492 48.58 MGLSQAFLLSLFLSLNCFSGSSTEFEVGDEDGWVVPQAKSDSQKYNQWASRNRFKFNDTVHFKYKKDSVLVVTEDEYDRCHSSHPTFFSNNGDSVFKLDRPGLFFFISGVFGHCERGQKMIIKVLNVAAASPVPANQTVAAAPSISAPIILLLAFPFAGMLFA 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15613676 15614248 - Bda010465.1 Bda12g00590 17605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00590 163 PANTHER BLUE COPPER PROTEIN 9 151 IPR039391 GO:0009055
Bda12g00590 163 Gene3D - 22 130 IPR008972 -
Bda12g00590 163 ProSiteProfiles Phytocyanin domain profile. 23 126 IPR003245 GO:0009055
Bda12g00590 163 CDD OsENODL1_like 23 125 IPR041846 -
Bda12g00590 163 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 151 - -
Bda12g00590 163 SUPERFAMILY Cupredoxins 22 125 IPR008972 -
Bda12g00590 163 Pfam Plastocyanin-like domain 38 118 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00590 - - - jre:109003316 186.808
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00879 Bda12g00590 CCT
Bda10g00828 Bda12g00590 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00860 Bda-Chr9:21054413 Bda12g00590 Bda-Chr12:15613676 1.15E-117 dispersed
Bda12g00590 Bda-Chr12:15613676 Bda13g01640 Bda-Chr13:39873479 4.48E-42 dispersed
Bda12g00590 Bda-Chr12:15613676 Bda14g00907 Bda-Chr14:7041790 3.04E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g315 . Blo06g00704 Bda04g00879 Bda10g00828 Bpe06g00744 . . . . Cmo17g00749 . . . . . Cpe12g00665 . . . . . . . . . . . . . . . . . . . Lsi02g03006 . . . . . . Bda12g00590 . . . . . . . . Cma17g00783 . Car17g00723 . . Bhi09g00442 . . . Hepe03g1524 . . Cla09g00002 Cam09g0001 Cec09g0001 Cco09g0001 Clacu09g0001 . Cre09g0002 . . Chy01g02254 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda01g01015 . 24 177 Phytocyanin Superfamily AT5G25090 53.4 4.7e-39 157.9
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00590 Bda_Chr12 FPKM 21.325727 19.477377 24.505316 25.144165 24.532642 23.309128 26.465488 14.849806 16.653524